Variant report

Variant	rs4702150
Chromosome Location	chr5:16514269-16514270
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16513910..16515735-chr5:16529020..16530796,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11133849	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186470	1.00[ASN][1000 genomes]
rs12186886	1.00[ASN][1000 genomes]
rs13155177	1.00[ASN][1000 genomes]
rs13155194	1.00[ASN][1000 genomes]
rs13156308	1.00[ASN][1000 genomes]
rs13158624	1.00[ASN][1000 genomes]
rs13163208	1.00[ASN][1000 genomes]
rs13167760	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169278	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13174423	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174815	1.00[ASN][1000 genomes]
rs13175322	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181082	0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs13183026	1.00[ASN][1000 genomes]
rs13183291	1.00[ASN][1000 genomes]
rs13184355	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185483	1.00[ASN][1000 genomes]
rs13188528	0.85[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17548729	1.00[ASN][1000 genomes]
rs2166383	1.00[ASN][1000 genomes]
rs34171525	1.00[ASN][1000 genomes]
rs34344458	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34610986	1.00[ASN][1000 genomes]
rs35379096	1.00[ASN][1000 genomes]
rs35413922	1.00[ASN][1000 genomes]
rs35429573	1.00[ASN][1000 genomes]
rs35431678	1.00[ASN][1000 genomes]
rs35445381	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35806092	1.00[ASN][1000 genomes]
rs3849100	1.00[ASN][1000 genomes]
rs3889076	1.00[ASN][1000 genomes]
rs4620025	1.00[ASN][1000 genomes]
rs4702147	1.00[ASN][1000 genomes]
rs4702148	1.00[ASN][1000 genomes]
rs56012028	1.00[ASN][1000 genomes]
rs6875404	1.00[ASN][1000 genomes]
rs6883888	1.00[ASN][1000 genomes]
rs6884712	1.00[ASN][1000 genomes]
rs6888052	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888589	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891867	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509400-16515600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:16509600-16515600	Weak transcription	Brain Substantia Nigra	brain
4	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
6	chr5:16511200-16519200	Weak transcription	Fetal Intestine Large	intestine
7	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:16511800-16519000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:16512000-16519000	Weak transcription	Fetal Intestine Small	intestine
10	chr5:16513200-16519200	Weak transcription	Left Ventricle	heart
11	chr5:16513200-16519800	Weak transcription	Right Ventricle	heart
12	chr5:16513400-16517000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:16514200-16514800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links