The 2.0 version of rSNPBase

Variant report

Variant rs13188528
Chromosome Location chr5:16506000-16506001
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16495800-16509000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:16496200-16509000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr5:16497000-16506200 Weak transcription Thymus Thymus
4 chr5:16497200-16506800 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr5:16500600-16507400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:16501200-16509000 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr5:16502400-16508800 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr5:16503200-16507400 Weak transcription Brain Cingulate Gyrus brain
9 chr5:16503200-16507600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr5:16503400-16507400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr5:16503400-16507600 Weak transcription NHEK skin
12 chr5:16503400-16508000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr5:16503400-16508600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr5:16503400-16508800 Weak transcription Brain Substantia Nigra brain
15 chr5:16503800-16507800 Weak transcription Osteobl bone
16 chr5:16503800-16509200 Weak transcription Brain Anterior Caudate brain
17 chr5:16504000-16506800 Strong transcription Primary T cells from cord blood blood
18 chr5:16504000-16507600 Enhancers Breast Myoepithelial Primary Cells Breast
19 chr5:16504000-16509400 Weak transcription Stomach Mucosa stomach
20 chr5:16504400-16506200 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
21 chr5:16504400-16508600 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr5:16504600-16506000 ZNF genes & repeats Fetal Intestine Large intestine
23 chr5:16504600-16506000 Enhancers Right Ventricle heart
24 chr5:16504600-16507400 Weak transcription Colonic Mucosa Colon
25 chr5:16504800-16506000 ZNF genes & repeats Right Atrium heart
26 chr5:16505000-16506800 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr5:16505000-16507400 Weak transcription Hela-S3 cervix
28 chr5:16505000-16509000 Active TSS Left Ventricle heart
29 chr5:16505200-16506400 Enhancers Liver Liver
30 chr5:16505400-16506200 Enhancers Fetal Heart heart
31 chr5:16505400-16506200 Genic enhancers Fetal Intestine Small intestine
32 chr5:16505600-16506000 Flanking Active TSS Psoas Muscle Psoas
33 chr5:16505600-16506200 Flanking Active TSS Fetal Muscle Trunk muscle
34 chr5:16505600-16506600 Enhancers Sigmoid Colon Sigmoid Colon
35 chr5:16505600-16506800 Enhancers Pancreas Pancrea
36 chr5:16505600-16508800 Active TSS Fetal Muscle Leg muscle
37 chr5:16505600-16509800 Active TSS Skeletal Muscle Female skeletal muscle
38 chr5:16505800-16506200 Enhancers Gastric stomach
39 chr5:16505800-16506400 Weak transcription Placenta Amnion Placenta Amnion
40 chr5:16505800-16506600 Enhancers Duodenum Mucosa Duodenum
41 chr5:16506000-16506400 Enhancers Fetal Intestine Large intestine
42 chr5:16506000-16506400 Enhancers Psoas Muscle Psoas
43 chr5:16506000-16506400 Active TSS Right Ventricle heart
44 chr5:16506000-16509400 Active TSS Right Atrium heart

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Last update: Aug 31, 2015