The 2.0 version of rSNPBase

Variant report

Variant rs35806092
Chromosome Location chr5:16503303-16503304
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16495800-16504400 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr5:16495800-16509000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:16496200-16509000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr5:16497000-16505800 Weak transcription Duodenum Mucosa Duodenum
5 chr5:16497000-16506200 Weak transcription Thymus Thymus
6 chr5:16497200-16504600 Weak transcription Fetal Intestine Small intestine
7 chr5:16497200-16506800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr5:16498000-16504600 Weak transcription Fetal Intestine Large intestine
9 chr5:16498800-16505400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr5:16500600-16504000 Weak transcription Pancreas Pancrea
11 chr5:16500600-16507400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:16500800-16505200 Weak transcription Fetal Muscle Leg muscle
13 chr5:16501000-16504600 Weak transcription Right Ventricle heart
14 chr5:16501200-16509000 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr5:16501400-16504000 Weak transcription Primary T cells from cord blood blood
16 chr5:16502200-16503400 Enhancers Fetal Brain Male brain
17 chr5:16502200-16503600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
18 chr5:16502400-16508800 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr5:16502600-16503400 Enhancers Fetal Heart heart
20 chr5:16502800-16503400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
21 chr5:16502800-16503400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr5:16502800-16503400 Enhancers Brain Substantia Nigra brain
23 chr5:16503000-16503400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr5:16503000-16503400 Enhancers Brain Inferior Temporal Lobe brain
25 chr5:16503000-16503400 Flanking Active TSS Hela-S3 cervix
26 chr5:16503000-16503400 Enhancers NHEK skin
27 chr5:16503200-16503400 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
28 chr5:16503200-16503400 Flanking Active TSS Skeletal Muscle Female skeletal muscle
29 chr5:16503200-16503400 Enhancers Osteobl bone
30 chr5:16503200-16503800 Weak transcription Stomach Mucosa stomach
31 chr5:16503200-16504000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr5:16503200-16504000 Weak transcription Psoas Muscle Psoas
33 chr5:16503200-16504000 Weak transcription Right Atrium heart
34 chr5:16503200-16504400 Weak transcription Left Ventricle heart
35 chr5:16503200-16505600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr5:16503200-16505800 Weak transcription Gastric stomach
37 chr5:16503200-16507400 Weak transcription Brain Cingulate Gyrus brain
38 chr5:16503200-16507600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015