Variant report

Variant	rs6891867
Chromosome Location	chr5:16445077-16445078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:16444558-16452045	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:16444955..16447603-chr5:16462286..16465092,2	K562	blood:
2	chr17:4851263..4851862-chr5:16444320..16445087,2	Hela-S3	cervix:
3	chr5:16444509..16447336-chr5:16448336..16451634,3	K562	blood:

Variant related genes	Relation type
ENSG00000248150	TF binding region
ENSG00000108515	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11133849	1.00[ASN][1000 genomes]
rs11959997	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11960019	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12186470	1.00[ASN][1000 genomes]
rs12186886	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155177	1.00[ASN][1000 genomes]
rs13155194	1.00[ASN][1000 genomes]
rs13156308	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158624	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163208	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167760	1.00[ASN][1000 genomes]
rs13169278	1.00[ASN][1000 genomes]
rs13174423	1.00[ASN][1000 genomes]
rs13174815	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13175322	1.00[ASN][1000 genomes]
rs13181082	1.00[ASN][1000 genomes]
rs13183026	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183291	1.00[ASN][1000 genomes]
rs13184355	1.00[ASN][1000 genomes]
rs13185483	1.00[ASN][1000 genomes]
rs13188528	1.00[ASN][1000 genomes]
rs17548729	0.96[CEU][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166383	1.00[ASN][1000 genomes]
rs34171525	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344458	1.00[ASN][1000 genomes]
rs34610986	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379096	1.00[ASN][1000 genomes]
rs35413922	1.00[ASN][1000 genomes]
rs35429573	1.00[ASN][1000 genomes]
rs35431678	1.00[ASN][1000 genomes]
rs35688054	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35806092	1.00[ASN][1000 genomes]
rs3849100	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889076	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620025	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702145	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4702147	1.00[ASN][1000 genomes]
rs4702148	1.00[ASN][1000 genomes]
rs4702150	1.00[ASN][1000 genomes]
rs56012028	1.00[ASN][1000 genomes]
rs6554928	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6554929	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6875404	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883888	0.92[CEU][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884712	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888052	1.00[ASN][1000 genomes]
rs6888589	1.00[ASN][1000 genomes]
rs7723124	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9968771	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16435600-16450400	Weak transcription	Fetal Heart	heart
8	chr5:16435800-16445400	Weak transcription	Right Ventricle	heart
9	chr5:16435800-16445600	Weak transcription	HSMMtube	muscle
10	chr5:16437000-16445800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:16438000-16449200	Weak transcription	Aorta	Aorta
12	chr5:16438200-16449000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:16438600-16448400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:16439400-16447000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:16439600-16446200	Weak transcription	Brain Substantia Nigra	brain
16	chr5:16439600-16447000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:16439600-16448400	Weak transcription	Brain Anterior Caudate	brain
18	chr5:16439800-16447000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:16440000-16445800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:16440000-16445800	Weak transcription	Liver	Liver
21	chr5:16440200-16445600	Weak transcription	Fetal Brain Female	brain
22	chr5:16440200-16446000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:16440200-16448200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:16440400-16445800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:16440600-16445600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:16441000-16445800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr5:16441400-16447000	Weak transcription	Spleen	Spleen
28	chr5:16441800-16446000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:16442000-16447200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:16442000-16449200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:16442400-16445600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:16442400-16446000	Weak transcription	Lung	lung
33	chr5:16442400-16446800	Weak transcription	Brain Germinal Matrix	brain
34	chr5:16442400-16447000	Weak transcription	Primary T cells from cord blood	blood
35	chr5:16442400-16449200	Weak transcription	Psoas Muscle	Psoas
36	chr5:16442600-16445800	Weak transcription	Primary B cells from cord blood	blood
37	chr5:16442600-16446000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:16442800-16445800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:16443000-16445400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:16443000-16445600	Weak transcription	HSMM	muscle
41	chr5:16443200-16445400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr5:16443200-16445800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr5:16443200-16449000	Weak transcription	Fetal Lung	lung
44	chr5:16443200-16449200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:16443400-16445600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:16443400-16448200	Weak transcription	A549	lung
47	chr5:16443600-16445400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr5:16443600-16445600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr5:16443600-16445800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:16443600-16445800	Weak transcription	Primary monocytes fromperipheralblood	blood

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