Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:16262076..16264265-chr5:16432783..16434475,2	K562	blood:
2	chr5:16431005..16433615-chr5:16438912..16441485,2	K562	blood:
3	chr5:16427275..16429815-chr5:16430365..16433352,2	K562	blood:
4	chr5:16431881..16434075-chr5:16434927..16437760,2	K562	blood:
5	chr5:16431085..16433776-chr5:16465183..16467258,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11960019	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12186886	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13154545	0.81[AMR][1000 genomes]
rs13156308	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13158624	0.83[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13163208	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13174815	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13183026	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16868622	0.82[YRI][hapmap]
rs17548729	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34171525	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34610986	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35688054	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3849100	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3889076	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4620025	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4702145	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6554928	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6554929	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6875404	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6883888	0.87[CEU][hapmap]
rs6884712	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6891867	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7723124	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9968771	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16433000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:16430800-16433000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr5:16431000-16433400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
7	chr5:16431200-16434200	Weak transcription	Fetal Heart	heart
8	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: