Variant report

Variant	rs16868622
Chromosome Location	chr5:16456478-16456479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16456022..16456591-chr5:17190273..17191219,2	K562	blood:
2	chr5:16449464..16453354-chr5:16453748..16457169,4	K562	blood:
3	chr5:16160155..16161946-chr5:16453809..16456643,2	K562	blood:
4	chr5:16160550..16161095-chr5:16456058..16456643,2	MCF-7	breast:
5	chr5:16160527..16161482-chr5:16456070..16456876,5	MCF-7	breast:
6	chr5:16445742..16447886-chr5:16454052..16456768,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10520841	0.88[AFR][1000 genomes]
rs11959997	0.82[YRI][hapmap]
rs16868606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868609	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868627	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868645	0.97[AFR][1000 genomes]
rs16868657	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16868659	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16868665	1.00[YRI][hapmap]
rs16868678	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs16868685	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2896234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3849099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56404323	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57790007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753052	0.97[AFR][1000 genomes]
rs73753065	0.97[AFR][1000 genomes]
rs73753327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753330	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:16445800-16463800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr5:16446200-16458000	Strong transcription	Fetal Stomach	stomach
4	chr5:16447000-16463600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:16447200-16461400	Strong transcription	Fetal Intestine Large	intestine
6	chr5:16447200-16463800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:16447200-16464800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:16448200-16463600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:16448400-16457600	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr5:16448400-16462000	Strong transcription	Placenta	Placenta
11	chr5:16448400-16463400	Strong transcription	Thymus	Thymus
12	chr5:16448400-16464000	Strong transcription	Fetal Thymus	thymus
13	chr5:16448600-16463800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:16449200-16463600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:16451600-16465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:16452400-16463400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:16452600-16457800	Weak transcription	Gastric	stomach
18	chr5:16453000-16457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:16453000-16459400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:16453200-16460000	Weak transcription	Fetal Brain Male	brain
21	chr5:16453200-16461000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:16453400-16461200	Weak transcription	Esophagus	oesophagus
23	chr5:16453400-16461400	Weak transcription	Ovary	ovary
24	chr5:16453800-16459000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:16454400-16462000	Strong transcription	A549	lung
26	chr5:16454600-16456800	Genic enhancers	Left Ventricle	heart
27	chr5:16454600-16457000	Strong transcription	HepG2	liver
28	chr5:16454800-16456600	Strong transcription	Brain Germinal Matrix	brain
29	chr5:16454800-16456600	Genic enhancers	HSMM	muscle
30	chr5:16454800-16456600	Genic enhancers	NHLF	lung
31	chr5:16454800-16456800	Genic enhancers	K562	blood
32	chr5:16454800-16457000	Genic enhancers	HMEC	breast
33	chr5:16454800-16457000	Genic enhancers	NHDF-Ad	bronchial
34	chr5:16454800-16458600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr5:16454800-16458800	Strong transcription	Fetal Brain Female	brain
36	chr5:16454800-16461000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:16454800-16461200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:16454800-16463600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr5:16454800-16463800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:16454800-16463800	Strong transcription	Primary hematopoietic stem cells	blood
41	chr5:16454800-16463800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
42	chr5:16455000-16456800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:16455000-16456800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr5:16455000-16457000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr5:16455000-16457000	Genic enhancers	Hela-S3	cervix
46	chr5:16455000-16457600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr5:16455000-16457600	Weak transcription	Lung	lung
48	chr5:16455000-16457800	Genic enhancers	Muscle Satellite Cultured Cells	--
49	chr5:16455000-16458800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:16455000-16459000	Strong transcription	Fetal Kidney	kidney

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