Variant report

Variant	rs3849099
Chromosome Location	chr5:16426585-16426586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10520841	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16868606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868609	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868622	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868627	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868645	0.90[AFR][1000 genomes]
rs16868657	0.90[AFR][1000 genomes]
rs16868659	0.90[AFR][1000 genomes]
rs16868675	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868678	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868685	0.90[AFR][1000 genomes]
rs2896234	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3804255	1.00[ASN][1000 genomes]
rs55904417	0.92[EUR][1000 genomes]
rs56404323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57790007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61203575	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753052	0.90[AFR][1000 genomes]
rs73753065	0.90[AFR][1000 genomes]
rs73753327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753328	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753375	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16418800-16428200	Weak transcription	Right Atrium	heart
2	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
3	chr5:16420200-16427200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:16421000-16427400	Weak transcription	Fetal Heart	heart
5	chr5:16421200-16430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:16421600-16427600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:16425600-16426600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:16425600-16427000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:16425800-16430800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:16426000-16427200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:16426000-16427600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:16426000-16427600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:16426000-16428000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:16426000-16428000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:16426000-16428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:16426200-16426800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:16426200-16427400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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