Variant report

Variant	rs55904417
Chromosome Location	chr5:16464444-16464445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:16444955..16447603-chr5:16462286..16465092,2	K562	blood:
2	chr5:16370819..16372575-chr5:16463495..16465829,2	K562	blood:
3	chr5:16428340..16430964-chr5:16464329..16467198,2	K562	blood:
4	chr5:16416919..16420001-chr5:16462576..16465755,4	K562	blood:
5	chr5:16317707..16319986-chr5:16463325..16465532,2	K562	blood:
6	chr5:16441714..16444062-chr5:16462232..16464622,2	K562	blood:
7	chr5:16433331..16435190-chr5:16462896..16465890,2	MCF-7	breast:
8	chr5:16363858..16365383-chr5:16462899..16465637,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000249737	Chromatin interaction

rs_ID	r²[population]
rs10520841	0.84[EUR][1000 genomes]
rs16868606	0.92[EUR][1000 genomes]
rs16868609	0.92[EUR][1000 genomes]
rs16868675	0.84[EUR][1000 genomes]
rs16868678	0.84[EUR][1000 genomes]
rs3849099	0.92[EUR][1000 genomes]
rs56719397	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58029623	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73753046	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73753370	0.92[EUR][1000 genomes]
rs73753371	0.92[EUR][1000 genomes]
rs73753374	0.92[EUR][1000 genomes]
rs73753385	0.92[EUR][1000 genomes]
rs73753390	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:16447200-16464800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:16451600-16465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:16455600-16464800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:16462800-16465000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:16463000-16467200	Active TSS	Right Ventricle	heart
7	chr5:16463400-16464600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:16463400-16467600	Active TSS	HSMMtube	muscle
9	chr5:16463600-16464600	Transcr. at gene 5' and 3'	K562	blood
10	chr5:16463600-16464800	Enhancers	Gastric	stomach
11	chr5:16463600-16465000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr5:16463600-16465000	Flanking Active TSS	Fetal Heart	heart
13	chr5:16463600-16465000	Enhancers	Spleen	Spleen
14	chr5:16463600-16465200	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr5:16463600-16465600	Transcr. at gene 5' and 3'	Dnd41	blood
16	chr5:16463600-16466000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:16463600-16466800	Active TSS	Right Atrium	heart
18	chr5:16463800-16464600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:16463800-16464600	Enhancers	Primary B cells from peripheral blood	blood
20	chr5:16463800-16464600	Weak transcription	Aorta	Aorta
21	chr5:16463800-16464600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:16463800-16464600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr5:16463800-16464600	Enhancers	Stomach Mucosa	stomach
24	chr5:16463800-16464800	Enhancers	Small Intestine	intestine
25	chr5:16463800-16465000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:16463800-16465000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:16463800-16465000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr5:16463800-16465000	Flanking Active TSS	NH-A	brain
29	chr5:16463800-16465400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr5:16463800-16465600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:16463800-16467200	Active TSS	Pancreas	Pancrea
32	chr5:16463800-16467200	Active TSS	Psoas Muscle	Psoas
33	chr5:16463800-16468000	Active TSS	Left Ventricle	heart
34	chr5:16464000-16464600	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr5:16464000-16464600	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr5:16464000-16464800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:16464000-16464800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:16464000-16464800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr5:16464000-16464800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr5:16464000-16464800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:16464000-16464800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:16464000-16464800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr5:16464000-16464800	Flanking Active TSS	GM12878-XiMat	blood
44	chr5:16464000-16464800	Flanking Active TSS	NHDF-Ad	bronchial
45	chr5:16464000-16465000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr5:16464000-16465000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:16464000-16465000	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr5:16464000-16465000	Flanking Active TSS	HepG2	liver
49	chr5:16464000-16465000	Flanking Active TSS	NHEK	skin
50	chr5:16464000-16465200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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