Variant report

Variant rs56719397
Chromosome Location chr5:16462141-16462142
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16428400-16464600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:16445800-16463800 Strong transcription Fetal Muscle Trunk muscle
3 chr5:16447000-16463600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr5:16447200-16463800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr5:16447200-16464800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr5:16448200-16463600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr5:16448400-16463400 Strong transcription Thymus Thymus
8 chr5:16448400-16464000 Strong transcription Fetal Thymus thymus
9 chr5:16448600-16463800 Strong transcription HUES48 Cell Line embryonic stem cell
10 chr5:16449200-16463600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr5:16451600-16465000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:16452400-16463400 Genic enhancers Primary T helper cells PMA-I stimulated --
13 chr5:16454800-16463600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
14 chr5:16454800-16463800 Strong transcription iPS-18 Cell Line embryonic stem cell
15 chr5:16454800-16463800 Strong transcription Primary hematopoietic stem cells blood
16 chr5:16454800-16463800 Genic enhancers Primary T helper cells fromperipheralblood blood
17 chr5:16455000-16463400 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
18 chr5:16455400-16463400 Genic enhancers Primary T killer naive cells fromperipheralblood blood
19 chr5:16455600-16464000 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr5:16455600-16464800 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr5:16455800-16464000 Genic enhancers Osteobl bone
22 chr5:16456400-16462400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr5:16456400-16463400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr5:16456400-16463800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr5:16456400-16463800 Strong transcription iPS-20b Cell Line embryonic stem cell
26 chr5:16456400-16464000 Strong transcription HUES64 Cell Line embryonic stem cell
27 chr5:16456600-16463600 Strong transcription HUVEC blood vessel
28 chr5:16456600-16463800 Strong transcription Primary hematopoietic stem cells short term culture blood
29 chr5:16456800-16462200 Weak transcription Stomach Mucosa stomach
30 chr5:16456800-16462600 Strong transcription NHEK skin
31 chr5:16456800-16463200 Strong transcription Monocytes-CD14+_RO01746 blood
32 chr5:16456800-16463400 Strong transcription Brain Anterior Caudate brain
33 chr5:16456800-16463600 Strong transcription K562 blood
34 chr5:16456800-16463800 Strong transcription HUES6 Cell Line embryonic stem cell
35 chr5:16456800-16464000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr5:16457000-16463400 Strong transcription Primary B cells from cord blood blood
37 chr5:16457200-16463200 Strong transcription HMEC breast
38 chr5:16457400-16463400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr5:16457600-16463400 Strong transcription Brain Substantia Nigra brain
40 chr5:16457600-16463600 Strong transcription H1 Cell Line embryonic stem cell
41 chr5:16457600-16463800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr5:16457800-16464000 Genic enhancers Primary T helper naive cells from peripheral blood blood
43 chr5:16458000-16462200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:16458200-16462200 Strong transcription Rectal Mucosa Donor 29 rectum
45 chr5:16459000-16463600 Genic enhancers Primary T cells from cord blood blood
46 chr5:16459000-16464000 Genic enhancers Primary T regulatory cells fromperipheralblood blood
47 chr5:16459400-16463200 Strong transcription Placenta Amnion Placenta Amnion
48 chr5:16459600-16464000 Genic enhancers Duodenum Smooth Muscle Duodenum
49 chr5:16459800-16462800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
50 chr5:16459800-16463600 Genic enhancers Duodenum Mucosa Duodenum

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