Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16428340..16430964-chr5:16464329..16467198,2	K562	blood:
2	chr5:16429539..16431653-chr5:16465262..16467825,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173545	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10452497	1.00[EUR][1000 genomes]
rs13170268	1.00[EUR][1000 genomes]
rs16868520	1.00[EUR][1000 genomes]
rs16868547	1.00[EUR][1000 genomes]
rs16868549	1.00[EUR][1000 genomes]
rs16868554	1.00[EUR][1000 genomes]
rs16868633	1.00[EUR][1000 genomes]
rs16868690	1.00[EUR][1000 genomes]
rs16868696	1.00[EUR][1000 genomes]
rs16899113	1.00[EUR][1000 genomes]
rs3849101	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3901884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4608921	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56284496	1.00[EUR][1000 genomes]
rs56719397	1.00[EUR][1000 genomes]
rs58029623	1.00[EUR][1000 genomes]
rs58526375	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60656173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61156892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6877375	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880065	1.00[EUR][1000 genomes]
rs73753046	1.00[EUR][1000 genomes]
rs73753309	1.00[EUR][1000 genomes]
rs73753319	1.00[EUR][1000 genomes]
rs73753390	1.00[EUR][1000 genomes]
rs7710117	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7724068	1.00[EUR][1000 genomes]
rs7725043	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7726000	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16421200-16430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:16425800-16430800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:16428200-16431400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:16428200-16431600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16428400-16431600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:16428400-16433000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:16428600-16430200	Weak transcription	Fetal Heart	heart
10	chr5:16428600-16430800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:16428600-16430800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:16428600-16430800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:16428600-16430800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:16428800-16430800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:16429000-16430200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:16429000-16430200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:16429200-16431000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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