The 2.0 version of rSNPBase

Variant report

Variant rs16868690
Chromosome Location chr5:16490617-16490618
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16468200-16490800 Weak transcription Right Ventricle heart
2 chr5:16468400-16493000 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr5:16475400-16495200 Weak transcription Thymus Thymus
4 chr5:16477600-16493000 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr5:16478200-16493400 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr5:16480600-16491200 Enhancers Fetal Intestine Large intestine
7 chr5:16482800-16494800 Enhancers Rectal Mucosa Donor 31 rectum
8 chr5:16483400-16494600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr5:16484800-16492000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:16484800-16492000 Weak transcription NHEK skin
11 chr5:16485000-16492000 Weak transcription HMEC breast
12 chr5:16485000-16492800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr5:16485200-16492600 Weak transcription Small Intestine intestine
14 chr5:16487200-16491800 Weak transcription Brain Angular Gyrus brain
15 chr5:16487800-16493000 Weak transcription Liver Liver
16 chr5:16488200-16495200 Enhancers Fetal Heart heart
17 chr5:16488400-16494400 Weak transcription Primary T cells from cord blood blood
18 chr5:16488400-16499800 Weak transcription Gastric stomach
19 chr5:16488600-16490800 Enhancers Skeletal Muscle Female skeletal muscle
20 chr5:16488600-16491000 Enhancers Fetal Intestine Small intestine
21 chr5:16488600-16492000 Weak transcription Stomach Mucosa stomach
22 chr5:16488600-16492600 Weak transcription Placenta Amnion Placenta Amnion
23 chr5:16488800-16491000 Enhancers Skeletal Muscle Male skeletal muscle
24 chr5:16488800-16494400 Weak transcription Psoas Muscle Psoas
25 chr5:16488800-16494800 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr5:16489000-16491200 Enhancers Fetal Brain Male brain
27 chr5:16489000-16492000 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr5:16489000-16495000 Weak transcription Duodenum Mucosa Duodenum
29 chr5:16489600-16494600 Enhancers Breast Myoepithelial Primary Cells Breast
30 chr5:16489800-16492200 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr5:16490000-16492000 Weak transcription Brain Cingulate Gyrus brain
32 chr5:16490000-16492000 Weak transcription HSMM muscle
33 chr5:16490000-16492200 Weak transcription Muscle Satellite Cultured Cells --
34 chr5:16490000-16492200 Weak transcription NHDF-Ad bronchial
35 chr5:16490000-16492400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr5:16490000-16492600 Weak transcription Rectal Smooth Muscle rectum
37 chr5:16490000-16492800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr5:16490200-16490800 Weak transcription Brain Substantia Nigra brain
39 chr5:16490200-16491600 Enhancers Left Ventricle heart
40 chr5:16490200-16492200 Enhancers Pancreas Pancrea
41 chr5:16490200-16493800 Enhancers Fetal Muscle Leg muscle
42 chr5:16490400-16491200 Weak transcription Brain Hippocampus Middle brain
43 chr5:16490400-16491200 Weak transcription Brain Inferior Temporal Lobe brain
44 chr5:16490400-16491200 Weak transcription HSMMtube muscle
45 chr5:16490400-16492600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr5:16490600-16492000 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015