Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16433331..16435190-chr5:16462896..16465890,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10452497	1.00[EUR][1000 genomes]
rs13170268	1.00[EUR][1000 genomes]
rs16868520	1.00[EUR][1000 genomes]
rs16868547	1.00[EUR][1000 genomes]
rs16868549	1.00[EUR][1000 genomes]
rs16868554	1.00[EUR][1000 genomes]
rs16868633	1.00[EUR][1000 genomes]
rs16868690	1.00[EUR][1000 genomes]
rs16868696	1.00[EUR][1000 genomes]
rs16899113	1.00[EUR][1000 genomes]
rs3849101	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3860133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3901884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4608921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56284496	1.00[EUR][1000 genomes]
rs56719397	1.00[EUR][1000 genomes]
rs58029623	1.00[EUR][1000 genomes]
rs58526375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60656173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61156892	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6877375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880065	1.00[EUR][1000 genomes]
rs73753046	1.00[EUR][1000 genomes]
rs73753309	1.00[EUR][1000 genomes]
rs73753319	1.00[EUR][1000 genomes]
rs73753390	1.00[EUR][1000 genomes]
rs7710117	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7724068	1.00[EUR][1000 genomes]
rs7726000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16434200-16434800	Enhancers	Fetal Heart	heart
8	chr5:16434600-16435800	Enhancers	HSMMtube	muscle

Quick Search: