Variant report

Variant rs16868696
Chromosome Location chr5:16505707-16505708
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16495800-16509000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:16496200-16509000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr5:16497000-16505800 Weak transcription Duodenum Mucosa Duodenum
4 chr5:16497000-16506200 Weak transcription Thymus Thymus
5 chr5:16497200-16506800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr5:16500600-16507400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:16501200-16509000 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr5:16502400-16508800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr5:16503200-16505800 Weak transcription Gastric stomach
10 chr5:16503200-16507400 Weak transcription Brain Cingulate Gyrus brain
11 chr5:16503200-16507600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr5:16503400-16507400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr5:16503400-16507600 Weak transcription NHEK skin
14 chr5:16503400-16508000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr5:16503400-16508600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr5:16503400-16508800 Weak transcription Brain Substantia Nigra brain
17 chr5:16503800-16507800 Weak transcription Osteobl bone
18 chr5:16503800-16509200 Weak transcription Brain Anterior Caudate brain
19 chr5:16504000-16506800 Strong transcription Primary T cells from cord blood blood
20 chr5:16504000-16507600 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr5:16504000-16509400 Weak transcription Stomach Mucosa stomach
22 chr5:16504400-16506200 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
23 chr5:16504400-16508600 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr5:16504600-16506000 ZNF genes & repeats Fetal Intestine Large intestine
25 chr5:16504600-16506000 Enhancers Right Ventricle heart
26 chr5:16504600-16507400 Weak transcription Colonic Mucosa Colon
27 chr5:16504800-16506000 ZNF genes & repeats Right Atrium heart
28 chr5:16505000-16506800 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr5:16505000-16507400 Weak transcription Hela-S3 cervix
30 chr5:16505000-16509000 Active TSS Left Ventricle heart
31 chr5:16505200-16506400 Enhancers Liver Liver
32 chr5:16505400-16506200 Enhancers Fetal Heart heart
33 chr5:16505400-16506200 Genic enhancers Fetal Intestine Small intestine
34 chr5:16505600-16505800 Enhancers Placenta Amnion Placenta Amnion
35 chr5:16505600-16506000 Flanking Active TSS Psoas Muscle Psoas
36 chr5:16505600-16506200 Flanking Active TSS Fetal Muscle Trunk muscle
37 chr5:16505600-16506600 Enhancers Sigmoid Colon Sigmoid Colon
38 chr5:16505600-16506800 Enhancers Pancreas Pancrea
39 chr5:16505600-16508800 Active TSS Fetal Muscle Leg muscle
40 chr5:16505600-16509800 Active TSS Skeletal Muscle Female skeletal muscle

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