Variant report

Variant	rs7726000
Chromosome Location	chr5:16428074-16428075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr5:16427393-16428218	H1-neurons	neurons:	n/a	chr5:16427637-16427650

Variant related genes	Relation type
ENSG00000249737	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10452497	1.00[EUR][1000 genomes]
rs13170268	1.00[EUR][1000 genomes]
rs16868520	1.00[EUR][1000 genomes]
rs16868547	1.00[EUR][1000 genomes]
rs16868549	1.00[EUR][1000 genomes]
rs16868554	1.00[EUR][1000 genomes]
rs16868633	1.00[EUR][1000 genomes]
rs16868690	1.00[EUR][1000 genomes]
rs16868696	1.00[EUR][1000 genomes]
rs16899113	1.00[EUR][1000 genomes]
rs3849101	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3860133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3901884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4608921	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56284496	1.00[EUR][1000 genomes]
rs56719397	1.00[EUR][1000 genomes]
rs58029623	1.00[EUR][1000 genomes]
rs58526375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60656173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61156892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6877375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880065	1.00[EUR][1000 genomes]
rs73753046	1.00[EUR][1000 genomes]
rs73753309	1.00[EUR][1000 genomes]
rs73753319	1.00[EUR][1000 genomes]
rs73753390	1.00[EUR][1000 genomes]
rs7710117	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7724068	1.00[EUR][1000 genomes]
rs7725043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16418800-16428200	Weak transcription	Right Atrium	heart
2	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
3	chr5:16421200-16430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:16425800-16430800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:16426000-16428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:16427200-16429000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:16427200-16429000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:16427400-16428400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:16427400-16428600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:16427400-16428600	Enhancers	Fetal Heart	heart
11	chr5:16427600-16428200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:16427600-16428400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:16427600-16428400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:16427600-16428400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:16427600-16428600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:16427600-16428600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:16427800-16428200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:16427800-16428200	Enhancers	Brain Germinal Matrix	brain
19	chr5:16427800-16428400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:16427800-16428600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:16428000-16428200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:16428000-16428600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:16428000-16428600	Enhancers	HUES6 Cell Line	embryonic stem cell

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