Variant report

Variant	rs16868678
Chromosome Location	chr5:16481563-16481564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:16481550-16481609	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:16475552..16477354-chr5:16480193..16482581,3	MCF-7	breast:
2	chr5:16473403..16475973-chr5:16481305..16483027,3	K562	blood:
3	chr5:16465242..16468637-chr5:16478270..16481845,3	MCF-7	breast:

Variant related genes	Relation type
FAM134B	TF binding region
ENSG00000173545	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10520841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868606	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868609	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868622	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs16868627	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs16868645	0.90[AFR][1000 genomes]
rs16868657	0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs16868659	0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs16868675	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868685	0.87[YRI][hapmap];0.90[AFR][1000 genomes]
rs2896234	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3804255	1.00[ASN][1000 genomes]
rs3849099	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55904417	0.84[EUR][1000 genomes]
rs56404323	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57790007	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61203575	0.88[AFR][1000 genomes]
rs73753052	0.90[AFR][1000 genomes]
rs73753065	0.90[AFR][1000 genomes]
rs73753327	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753328	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753330	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753333	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753370	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73753371	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753372	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753374	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753375	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753380	0.88[AFR][1000 genomes]
rs73753385	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16468000-16481800	Weak transcription	Fetal Thymus	thymus
2	chr5:16468200-16481600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:16468200-16482000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr5:16468200-16483200	Weak transcription	A549	lung
5	chr5:16468200-16483400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:16468200-16484000	Weak transcription	Small Intestine	intestine
7	chr5:16468200-16485000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:16468200-16487400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:16468200-16489600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:16468200-16490800	Weak transcription	Right Ventricle	heart
11	chr5:16468400-16493000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:16469800-16489800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:16470000-16486800	Weak transcription	Brain Angular Gyrus	brain
14	chr5:16470000-16486800	Weak transcription	Gastric	stomach
15	chr5:16470000-16486800	Weak transcription	Pancreas	Pancrea
16	chr5:16470000-16486800	Weak transcription	Psoas Muscle	Psoas
17	chr5:16470000-16490200	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:16470400-16489000	Weak transcription	Fetal Brain Male	brain
19	chr5:16472800-16483400	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:16475400-16481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:16475400-16483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:16475400-16495200	Weak transcription	Thymus	Thymus
23	chr5:16475800-16488800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:16476800-16482600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:16477600-16486800	Weak transcription	Left Ventricle	heart
26	chr5:16477600-16493000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:16478200-16493400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:16478600-16482600	Weak transcription	Fetal Heart	heart
29	chr5:16480600-16481800	Strong transcription	Primary T cells from cord blood	blood
30	chr5:16480600-16487400	Enhancers	Fetal Intestine Small	intestine
31	chr5:16480600-16491200	Enhancers	Fetal Intestine Large	intestine
32	chr5:16480800-16481600	Enhancers	HSMM	muscle
33	chr5:16480800-16481800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:16481000-16481600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:16481000-16481600	Enhancers	HSMMtube	muscle
36	chr5:16481000-16481600	Enhancers	NHEK	skin
37	chr5:16481200-16481600	Enhancers	HMEC	breast
38	chr5:16481200-16481800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:16481200-16481800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr5:16481200-16483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr5:16481400-16486600	Weak transcription	Liver	Liver

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