Variant report

Variant	rs73753372
Chromosome Location	chr5:16439511-16439512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF622-1	chr5:16439362-16439584	NR_104625
2	lnc-ZNF622-1	chr5:16439362-16439584	XLOC_004743

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10520841	0.86[AFR][1000 genomes]
rs16868606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868645	0.95[AFR][1000 genomes]
rs16868657	0.95[AFR][1000 genomes]
rs16868659	0.95[AFR][1000 genomes]
rs16868675	1.00[ASN][1000 genomes]
rs16868678	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16868685	0.95[AFR][1000 genomes]
rs2896234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3804255	1.00[ASN][1000 genomes]
rs3849099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56404323	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57790007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61203575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753052	0.95[AFR][1000 genomes]
rs73753065	0.95[AFR][1000 genomes]
rs73753327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753328	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16435600-16450400	Weak transcription	Fetal Heart	heart
8	chr5:16435800-16445400	Weak transcription	Right Ventricle	heart
9	chr5:16435800-16445600	Weak transcription	HSMMtube	muscle
10	chr5:16437000-16445800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:16438000-16449200	Weak transcription	Aorta	Aorta
12	chr5:16438200-16449000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:16438600-16448400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:16439400-16439600	Enhancers	Brain Anterior Caudate	brain
15	chr5:16439400-16439600	Enhancers	Brain Substantia Nigra	brain
16	chr5:16439400-16439600	ZNF genes & repeats	Right Atrium	heart
17	chr5:16439400-16441600	Weak transcription	Brain Germinal Matrix	brain
18	chr5:16439400-16447000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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