Variant report

Variant	rs57790007
Chromosome Location	chr5:16434871-16434872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16433331..16435190-chr5:16462896..16465890,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10520841	0.86[AFR][1000 genomes]
rs16868606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868645	0.95[AFR][1000 genomes]
rs16868657	0.95[AFR][1000 genomes]
rs16868659	0.95[AFR][1000 genomes]
rs16868675	1.00[ASN][1000 genomes]
rs16868678	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16868685	0.95[AFR][1000 genomes]
rs2896234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3804255	1.00[ASN][1000 genomes]
rs3849099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56404323	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61203575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753052	0.95[AFR][1000 genomes]
rs73753065	0.95[AFR][1000 genomes]
rs73753327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753328	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73753380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16434600-16435800	Enhancers	HSMMtube	muscle
8	chr5:16434800-16435400	Weak transcription	Fetal Heart	heart

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