The 2.0 version of rSNPBase

Variant report

Variant rs16868657
Chromosome Location chr5:16475360-16475361
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16466800-16477400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr5:16467000-16476600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr5:16467400-16478000 Weak transcription Fetal Muscle Trunk muscle
4 chr5:16467600-16479200 Weak transcription Primary B cells from cord blood blood
5 chr5:16468000-16477000 Weak transcription Primary hematopoietic stem cells blood
6 chr5:16468000-16481800 Weak transcription Fetal Thymus thymus
7 chr5:16468200-16475400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr5:16468200-16476200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr5:16468200-16476400 Weak transcription Ovary ovary
10 chr5:16468200-16476800 Weak transcription Brain Substantia Nigra brain
11 chr5:16468200-16477800 Weak transcription Brain Anterior Caudate brain
12 chr5:16468200-16480200 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr5:16468200-16480600 Weak transcription Fetal Intestine Small intestine
14 chr5:16468200-16481000 Weak transcription Brain Hippocampus Middle brain
15 chr5:16468200-16481600 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr5:16468200-16482000 Weak transcription Primary T cells fromperipheralblood blood
17 chr5:16468200-16483200 Weak transcription A549 lung
18 chr5:16468200-16483400 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr5:16468200-16484000 Weak transcription Small Intestine intestine
20 chr5:16468200-16485000 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr5:16468200-16487400 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr5:16468200-16489600 Weak transcription Brain Cingulate Gyrus brain
23 chr5:16468200-16490800 Weak transcription Right Ventricle heart
24 chr5:16468400-16475800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:16468400-16477200 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr5:16468400-16480800 Weak transcription HSMM muscle
27 chr5:16468400-16481000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr5:16468400-16493000 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr5:16468600-16476200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr5:16468600-16481000 Weak transcription NHDF-Ad bronchial
31 chr5:16468600-16481000 Weak transcription NHEK skin
32 chr5:16468800-16479800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr5:16468800-16481200 Weak transcription HMEC breast
34 chr5:16469400-16476800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr5:16469400-16477400 Weak transcription K562 blood
36 chr5:16469800-16480800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:16469800-16489800 Weak transcription Brain Inferior Temporal Lobe brain
38 chr5:16470000-16476200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr5:16470000-16486800 Weak transcription Brain Angular Gyrus brain
40 chr5:16470000-16486800 Weak transcription Gastric stomach
41 chr5:16470000-16486800 Weak transcription Pancreas Pancrea
42 chr5:16470000-16486800 Weak transcription Psoas Muscle Psoas
43 chr5:16470000-16490200 Weak transcription Fetal Muscle Leg muscle
44 chr5:16470400-16476000 Weak transcription Fetal Brain Female brain
45 chr5:16470400-16489000 Weak transcription Fetal Brain Male brain
46 chr5:16470800-16478400 Weak transcription Brain Germinal Matrix brain
47 chr5:16472200-16477000 Weak transcription GM12878-XiMat blood
48 chr5:16472800-16483400 Strong transcription Skeletal Muscle Female skeletal muscle
49 chr5:16474000-16478200 Strong transcription Liver Liver
50 chr5:16474600-16475400 Strong transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015