Variant report

Variant	rs16868659
Chromosome Location	chr5:16475553-16475554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16475552..16477354-chr5:16480193..16482581,3	MCF-7	breast:
2	chr5:16475504..16477375-chr5:16477695..16479504,2	MCF-7	breast:
3	chr5:16473787..16476378-chr5:16492092..16495057,2	MCF-7	breast:
4	chr5:16473403..16475973-chr5:16481305..16483027,3	K562	blood:

Variant related genes	Relation type
ENSG00000154153	Chromatin interaction

rs_ID	r²[population]
rs10520841	0.90[AFR][1000 genomes]
rs16868606	0.90[AFR][1000 genomes]
rs16868609	0.90[AFR][1000 genomes]
rs16868622	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16868627	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16868645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868657	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868665	1.00[YRI][hapmap]
rs16868678	0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs16868685	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2896234	0.89[AFR][1000 genomes]
rs3849099	0.90[AFR][1000 genomes]
rs56404323	0.90[AFR][1000 genomes]
rs57790007	0.95[AFR][1000 genomes]
rs61203575	0.97[AFR][1000 genomes]
rs73753052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753327	0.90[AFR][1000 genomes]
rs73753328	0.92[AFR][1000 genomes]
rs73753330	0.90[AFR][1000 genomes]
rs73753333	0.90[AFR][1000 genomes]
rs73753370	0.92[AFR][1000 genomes]
rs73753371	0.95[AFR][1000 genomes]
rs73753372	0.95[AFR][1000 genomes]
rs73753374	0.95[AFR][1000 genomes]
rs73753375	0.97[AFR][1000 genomes]
rs73753380	0.97[AFR][1000 genomes]
rs73753385	0.97[AFR][1000 genomes]

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16466800-16477400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:16467000-16476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:16467400-16478000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:16467600-16479200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:16468000-16477000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:16468000-16481800	Weak transcription	Fetal Thymus	thymus
7	chr5:16468200-16476200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:16468200-16476400	Weak transcription	Ovary	ovary
9	chr5:16468200-16476800	Weak transcription	Brain Substantia Nigra	brain
10	chr5:16468200-16477800	Weak transcription	Brain Anterior Caudate	brain
11	chr5:16468200-16480200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:16468200-16480600	Weak transcription	Fetal Intestine Small	intestine
13	chr5:16468200-16481000	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:16468200-16481600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:16468200-16482000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:16468200-16483200	Weak transcription	A549	lung
17	chr5:16468200-16483400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:16468200-16484000	Weak transcription	Small Intestine	intestine
19	chr5:16468200-16485000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:16468200-16487400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:16468200-16489600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:16468200-16490800	Weak transcription	Right Ventricle	heart
23	chr5:16468400-16475800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:16468400-16477200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr5:16468400-16480800	Weak transcription	HSMM	muscle
26	chr5:16468400-16481000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:16468400-16493000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:16468600-16476200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:16468600-16481000	Weak transcription	NHDF-Ad	bronchial
30	chr5:16468600-16481000	Weak transcription	NHEK	skin
31	chr5:16468800-16479800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:16468800-16481200	Weak transcription	HMEC	breast
33	chr5:16469400-16476800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:16469400-16477400	Weak transcription	K562	blood
35	chr5:16469800-16480800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:16469800-16489800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:16470000-16476200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:16470000-16486800	Weak transcription	Brain Angular Gyrus	brain
39	chr5:16470000-16486800	Weak transcription	Gastric	stomach
40	chr5:16470000-16486800	Weak transcription	Pancreas	Pancrea
41	chr5:16470000-16486800	Weak transcription	Psoas Muscle	Psoas
42	chr5:16470000-16490200	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:16470400-16476000	Weak transcription	Fetal Brain Female	brain
44	chr5:16470400-16489000	Weak transcription	Fetal Brain Male	brain
45	chr5:16470800-16478400	Weak transcription	Brain Germinal Matrix	brain
46	chr5:16472200-16477000	Weak transcription	GM12878-XiMat	blood
47	chr5:16472800-16483400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr5:16474000-16478200	Strong transcription	Liver	Liver
49	chr5:16474600-16475600	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr5:16474800-16475800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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