The 2.0 version of rSNPBase

Variant report

Variant rs61203575
Chromosome Location chr5:16458037-16458038
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16428400-16464600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:16445800-16463800 Strong transcription Fetal Muscle Trunk muscle
3 chr5:16447000-16463600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr5:16447200-16461400 Strong transcription Fetal Intestine Large intestine
5 chr5:16447200-16463800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr5:16447200-16464800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr5:16448200-16463600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr5:16448400-16462000 Strong transcription Placenta Placenta
9 chr5:16448400-16463400 Strong transcription Thymus Thymus
10 chr5:16448400-16464000 Strong transcription Fetal Thymus thymus
11 chr5:16448600-16463800 Strong transcription HUES48 Cell Line embryonic stem cell
12 chr5:16449200-16463600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr5:16451600-16465000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:16452400-16463400 Genic enhancers Primary T helper cells PMA-I stimulated --
15 chr5:16453000-16459400 Weak transcription Placenta Amnion Placenta Amnion
16 chr5:16453200-16460000 Weak transcription Fetal Brain Male brain
17 chr5:16453200-16461000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr5:16453400-16461200 Weak transcription Esophagus oesophagus
19 chr5:16453400-16461400 Weak transcription Ovary ovary
20 chr5:16453800-16459000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
21 chr5:16454400-16462000 Strong transcription A549 lung
22 chr5:16454800-16458600 Genic enhancers Fetal Adrenal Gland Adrenal Gland
23 chr5:16454800-16458800 Strong transcription Fetal Brain Female brain
24 chr5:16454800-16461000 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr5:16454800-16461200 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr5:16454800-16463600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
27 chr5:16454800-16463800 Strong transcription iPS-18 Cell Line embryonic stem cell
28 chr5:16454800-16463800 Strong transcription Primary hematopoietic stem cells blood
29 chr5:16454800-16463800 Genic enhancers Primary T helper cells fromperipheralblood blood
30 chr5:16455000-16458800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:16455000-16459000 Strong transcription Fetal Kidney kidney
32 chr5:16455000-16461400 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr5:16455000-16463400 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr5:16455400-16463400 Genic enhancers Primary T killer naive cells fromperipheralblood blood
35 chr5:16455600-16458800 Genic enhancers NH-A brain
36 chr5:16455600-16464000 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr5:16455600-16464800 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr5:16455800-16458600 Genic enhancers Breast Myoepithelial Primary Cells Breast
39 chr5:16455800-16461200 Strong transcription Liver Liver
40 chr5:16455800-16464000 Genic enhancers Osteobl bone
41 chr5:16456200-16461200 Weak transcription Aorta Aorta
42 chr5:16456400-16458400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
43 chr5:16456400-16458600 Enhancers Skeletal Muscle Male skeletal muscle
44 chr5:16456400-16459000 Strong transcription Fetal Muscle Leg muscle
45 chr5:16456400-16459000 Strong transcription Sigmoid Colon Sigmoid Colon
46 chr5:16456400-16459800 Strong transcription Duodenum Mucosa Duodenum
47 chr5:16456400-16460000 Weak transcription Colonic Mucosa Colon
48 chr5:16456400-16460600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr5:16456400-16461200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr5:16456400-16461200 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015