Variant report

Variant	rs10520841
Chromosome Location	chr5:16472881-16472882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16471300..16474284-chr5:16525885..16528906,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16868606	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16868609	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16868622	0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs16868627	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs16868645	0.90[AFR][1000 genomes]
rs16868657	1.00[LWK][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs16868659	0.80[YRI][hapmap];0.90[AFR][1000 genomes]
rs16868675	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16868678	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868685	0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs2896234	0.81[AFR][1000 genomes]
rs3849099	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55904417	0.84[EUR][1000 genomes]
rs56404323	0.81[AFR][1000 genomes]
rs57790007	0.86[AFR][1000 genomes]
rs61203575	0.88[AFR][1000 genomes]
rs73753052	0.90[AFR][1000 genomes]
rs73753065	0.90[AFR][1000 genomes]
rs73753327	0.81[AFR][1000 genomes]
rs73753328	0.83[AFR][1000 genomes]
rs73753330	0.81[AFR][1000 genomes]
rs73753333	0.81[AFR][1000 genomes]
rs73753370	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73753371	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73753372	0.86[AFR][1000 genomes]
rs73753374	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73753375	0.88[AFR][1000 genomes]
rs73753380	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73753385	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16466800-16477400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:16467000-16476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:16467400-16478000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:16467600-16479200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:16468000-16477000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:16468000-16481800	Weak transcription	Fetal Thymus	thymus
7	chr5:16468200-16474000	Weak transcription	Liver	Liver
8	chr5:16468200-16474800	Weak transcription	Primary T cells from cord blood	blood
9	chr5:16468200-16474800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:16468200-16474800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:16468200-16474800	Weak transcription	Thymus	Thymus
12	chr5:16468200-16475000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:16468200-16475000	Weak transcription	Esophagus	oesophagus
14	chr5:16468200-16475000	Weak transcription	Fetal Intestine Large	intestine
15	chr5:16468200-16475000	Weak transcription	Lung	lung
16	chr5:16468200-16475400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:16468200-16476200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:16468200-16476400	Weak transcription	Ovary	ovary
19	chr5:16468200-16476800	Weak transcription	Brain Substantia Nigra	brain
20	chr5:16468200-16477800	Weak transcription	Brain Anterior Caudate	brain
21	chr5:16468200-16480200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:16468200-16480600	Weak transcription	Fetal Intestine Small	intestine
23	chr5:16468200-16481000	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:16468200-16481600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:16468200-16482000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:16468200-16483200	Weak transcription	A549	lung
27	chr5:16468200-16483400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:16468200-16484000	Weak transcription	Small Intestine	intestine
29	chr5:16468200-16485000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:16468200-16487400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:16468200-16489600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr5:16468200-16490800	Weak transcription	Right Ventricle	heart
33	chr5:16468400-16474000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:16468400-16474600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:16468400-16475800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:16468400-16477200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr5:16468400-16480800	Weak transcription	HSMM	muscle
38	chr5:16468400-16481000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:16468400-16493000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr5:16468600-16476200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:16468600-16481000	Weak transcription	NHDF-Ad	bronchial
42	chr5:16468600-16481000	Weak transcription	NHEK	skin
43	chr5:16468800-16479800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:16468800-16481200	Weak transcription	HMEC	breast
45	chr5:16469400-16476800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:16469400-16477400	Weak transcription	K562	blood
47	chr5:16469600-16473400	Enhancers	Fetal Heart	heart
48	chr5:16469800-16475000	Weak transcription	Aorta	Aorta
49	chr5:16469800-16480800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:16469800-16489800	Weak transcription	Brain Inferior Temporal Lobe	brain

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