Variant report

Variant	rs13154545
Chromosome Location	chr5:16422015-16422016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11959997	0.81[AMR][1000 genomes]
rs12186886	0.81[AMR][1000 genomes]
rs13156308	0.84[AMR][1000 genomes]
rs13158624	0.88[AMR][1000 genomes]
rs13163208	0.85[AMR][1000 genomes]
rs13174815	0.88[AMR][1000 genomes]
rs13183026	0.81[AMR][1000 genomes]
rs17548729	0.88[AMR][1000 genomes]
rs34171525	0.88[AMR][1000 genomes]
rs34610986	0.85[AMR][1000 genomes]
rs3849100	0.88[AMR][1000 genomes]
rs3889076	0.85[AMR][1000 genomes]
rs6554929	0.85[AMR][1000 genomes]
rs6875404	0.82[AMR][1000 genomes]
rs6883888	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16418800-16428200	Weak transcription	Right Atrium	heart
2	chr5:16419200-16425600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
4	chr5:16420200-16422600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr5:16420200-16422600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:16420200-16425400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:16420200-16427200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:16421000-16427400	Weak transcription	Fetal Heart	heart
9	chr5:16421200-16425400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:16421200-16425600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:16421200-16430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:16421600-16427600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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