The 2.0 version of rSNPBase

Variant report

Variant rs6883888
Chromosome Location chr5:16479151-16479152
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16467600-16479200 Weak transcription Primary B cells from cord blood blood
2 chr5:16468000-16481800 Weak transcription Fetal Thymus thymus
3 chr5:16468200-16480200 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr5:16468200-16480600 Weak transcription Fetal Intestine Small intestine
5 chr5:16468200-16481000 Weak transcription Brain Hippocampus Middle brain
6 chr5:16468200-16481600 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr5:16468200-16482000 Weak transcription Primary T cells fromperipheralblood blood
8 chr5:16468200-16483200 Weak transcription A549 lung
9 chr5:16468200-16483400 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr5:16468200-16484000 Weak transcription Small Intestine intestine
11 chr5:16468200-16485000 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr5:16468200-16487400 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr5:16468200-16489600 Weak transcription Brain Cingulate Gyrus brain
14 chr5:16468200-16490800 Weak transcription Right Ventricle heart
15 chr5:16468400-16480800 Weak transcription HSMM muscle
16 chr5:16468400-16481000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:16468400-16493000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr5:16468600-16481000 Weak transcription NHDF-Ad bronchial
19 chr5:16468600-16481000 Weak transcription NHEK skin
20 chr5:16468800-16479800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr5:16468800-16481200 Weak transcription HMEC breast
22 chr5:16469800-16480800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr5:16469800-16489800 Weak transcription Brain Inferior Temporal Lobe brain
24 chr5:16470000-16486800 Weak transcription Brain Angular Gyrus brain
25 chr5:16470000-16486800 Weak transcription Gastric stomach
26 chr5:16470000-16486800 Weak transcription Pancreas Pancrea
27 chr5:16470000-16486800 Weak transcription Psoas Muscle Psoas
28 chr5:16470000-16490200 Weak transcription Fetal Muscle Leg muscle
29 chr5:16470400-16489000 Weak transcription Fetal Brain Male brain
30 chr5:16472800-16483400 Strong transcription Skeletal Muscle Female skeletal muscle
31 chr5:16475400-16481600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr5:16475400-16483800 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr5:16475400-16495200 Weak transcription Thymus Thymus
34 chr5:16475600-16481200 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr5:16475800-16488800 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr5:16476800-16481200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr5:16476800-16482600 Weak transcription Duodenum Mucosa Duodenum
38 chr5:16477600-16486800 Weak transcription Left Ventricle heart
39 chr5:16477600-16493000 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr5:16477800-16480400 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr5:16478200-16480400 Weak transcription Liver Liver
42 chr5:16478200-16480600 Weak transcription Primary T cells from cord blood blood
43 chr5:16478200-16493400 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr5:16478600-16480600 Weak transcription Fetal Intestine Large intestine
45 chr5:16478600-16482600 Weak transcription Fetal Heart heart

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015