Variant report

Variant	rs13167760
Chromosome Location	chr5:16510298-16510299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr5:16510213-16510459	MCF10A-Er-Src	breast:	n/a	n/a
2	TCF7L2	chr5:16510225-16510616	Hela-S3	cervix:	n/a	chr5:16510379-16510393
3	FOS	chr5:16510258-16510473	MCF10A-Er-Src	breast:	n/a	n/a
4	CEBPB	chr5:16510181-16510550	Hela-S3	cervix:	n/a	n/a
5	FOS	chr5:16510260-16510529	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16505398..16507882-chr5:16510089..16512522,2	K562	blood:

Variant related genes	Relation type
FAM134B	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11133849	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12186470	1.00[ASN][1000 genomes]
rs12186886	1.00[ASN][1000 genomes]
rs13155177	1.00[ASN][1000 genomes]
rs13155194	1.00[ASN][1000 genomes]
rs13156308	1.00[ASN][1000 genomes]
rs13158624	1.00[ASN][1000 genomes]
rs13163208	1.00[ASN][1000 genomes]
rs13169278	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13174423	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174815	1.00[ASN][1000 genomes]
rs13175322	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13181082	1.00[ASN][1000 genomes]
rs13183026	1.00[ASN][1000 genomes]
rs13183291	1.00[ASN][1000 genomes]
rs13184355	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185483	1.00[ASN][1000 genomes]
rs13188528	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17548729	1.00[ASN][1000 genomes]
rs2166383	1.00[ASN][1000 genomes]
rs34171525	1.00[ASN][1000 genomes]
rs34344458	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34610986	1.00[ASN][1000 genomes]
rs35379096	1.00[ASN][1000 genomes]
rs35413922	1.00[ASN][1000 genomes]
rs35429573	1.00[ASN][1000 genomes]
rs35431678	1.00[ASN][1000 genomes]
rs35445381	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35806092	1.00[ASN][1000 genomes]
rs3849100	1.00[ASN][1000 genomes]
rs3889076	1.00[ASN][1000 genomes]
rs4620025	1.00[ASN][1000 genomes]
rs4702147	1.00[ASN][1000 genomes]
rs4702148	1.00[ASN][1000 genomes]
rs4702150	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56012028	1.00[ASN][1000 genomes]
rs6875404	1.00[ASN][1000 genomes]
rs6883888	1.00[ASN][1000 genomes]
rs6884712	1.00[ASN][1000 genomes]
rs6888052	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888589	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891867	1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16508800-16511600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr5:16509000-16510600	Enhancers	Placenta	Placenta
3	chr5:16509200-16510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:16509400-16510400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:16509400-16510600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:16509400-16511200	Enhancers	Fetal Intestine Large	intestine
8	chr5:16509400-16513000	Weak transcription	Right Ventricle	heart
9	chr5:16509400-16515600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:16509600-16510400	Enhancers	HMEC	breast
11	chr5:16509600-16510600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:16509600-16510600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:16509600-16510600	Enhancers	Hela-S3	cervix
14	chr5:16509600-16515600	Weak transcription	Brain Substantia Nigra	brain
15	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:16509800-16513600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
18	chr5:16510000-16510400	Weak transcription	Primary T cells from cord blood	blood
19	chr5:16510000-16512000	Weak transcription	Left Ventricle	heart
20	chr5:16510200-16511600	Weak transcription	Fetal Intestine Small	intestine

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