Variant report

Variant	rs13174815
Chromosome Location	chr5:16425348-16425349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11133849	1.00[ASN][1000 genomes]
rs11959997	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11960019	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12186470	1.00[ASN][1000 genomes]
rs12186886	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154545	0.88[AMR][1000 genomes]
rs13155177	1.00[ASN][1000 genomes]
rs13155194	1.00[ASN][1000 genomes]
rs13156308	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158624	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163208	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167760	1.00[ASN][1000 genomes]
rs13169278	1.00[ASN][1000 genomes]
rs13174423	1.00[ASN][1000 genomes]
rs13175322	1.00[ASN][1000 genomes]
rs13181082	1.00[ASN][1000 genomes]
rs13183026	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183291	1.00[ASN][1000 genomes]
rs13184355	1.00[ASN][1000 genomes]
rs13185483	1.00[ASN][1000 genomes]
rs13188528	1.00[ASN][1000 genomes]
rs17548729	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166383	1.00[ASN][1000 genomes]
rs34171525	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344458	1.00[ASN][1000 genomes]
rs34610986	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379096	1.00[ASN][1000 genomes]
rs35413922	1.00[ASN][1000 genomes]
rs35429573	1.00[ASN][1000 genomes]
rs35431678	1.00[ASN][1000 genomes]
rs35688054	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35806092	1.00[ASN][1000 genomes]
rs3849100	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889076	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620025	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702145	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4702147	1.00[ASN][1000 genomes]
rs4702148	1.00[ASN][1000 genomes]
rs4702150	1.00[ASN][1000 genomes]
rs56012028	1.00[ASN][1000 genomes]
rs6554928	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6554929	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6875404	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883888	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6884712	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888052	1.00[ASN][1000 genomes]
rs6888589	1.00[ASN][1000 genomes]
rs6891867	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723124	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9968771	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16418800-16428200	Weak transcription	Right Atrium	heart
2	chr5:16419200-16425600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
4	chr5:16420200-16425400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:16420200-16427200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:16421000-16427400	Weak transcription	Fetal Heart	heart
7	chr5:16421200-16425400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:16421200-16425600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:16421200-16430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:16421600-16427600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:16422600-16425600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:16424800-16425600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:16425000-16425600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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