Variant report

Variant	rs6554929
Chromosome Location	chr5:16436329-16436330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16431881..16434075-chr5:16434927..16437760,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11959997	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11960019	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12186886	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13154545	0.85[AMR][1000 genomes]
rs13156308	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13158624	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13163208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13174815	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13183026	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17548729	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34171525	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34610986	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35688054	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3849100	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3889076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4620025	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4702145	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6554928	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6875404	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6883888	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6884712	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6891867	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7723124	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9968771	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16435600-16439400	Weak transcription	Right Atrium	heart
8	chr5:16435600-16450400	Weak transcription	Fetal Heart	heart
9	chr5:16435800-16445400	Weak transcription	Right Ventricle	heart
10	chr5:16435800-16445600	Weak transcription	HSMMtube	muscle

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