The 2.0 version of rSNPBase

Variant report

Variant rs13185483
Chromosome Location chr5:16493251-16493252
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16475400-16495200 Weak transcription Thymus Thymus
2 chr5:16478200-16493400 Weak transcription Primary T helper cells fromperipheralblood blood
3 chr5:16482800-16494800 Enhancers Rectal Mucosa Donor 31 rectum
4 chr5:16483400-16494600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr5:16488200-16495200 Enhancers Fetal Heart heart
6 chr5:16488400-16494400 Weak transcription Primary T cells from cord blood blood
7 chr5:16488400-16499800 Weak transcription Gastric stomach
8 chr5:16488800-16494400 Weak transcription Psoas Muscle Psoas
9 chr5:16488800-16494800 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr5:16489000-16495000 Weak transcription Duodenum Mucosa Duodenum
11 chr5:16489600-16494600 Enhancers Breast Myoepithelial Primary Cells Breast
12 chr5:16490200-16493800 Enhancers Fetal Muscle Leg muscle
13 chr5:16491200-16493800 Enhancers HSMMtube muscle
14 chr5:16491200-16494000 Enhancers Brain Hippocampus Middle brain
15 chr5:16491200-16494200 Enhancers Brain Inferior Temporal Lobe brain
16 chr5:16491800-16494000 Enhancers Brain Angular Gyrus brain
17 chr5:16492000-16493800 Enhancers Brain Cingulate Gyrus brain
18 chr5:16492000-16494000 Enhancers Stomach Mucosa stomach
19 chr5:16492000-16494000 Enhancers HSMM muscle
20 chr5:16492000-16494600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr5:16492200-16493800 Enhancers Muscle Satellite Cultured Cells --
22 chr5:16492200-16493800 Enhancers Fetal Intestine Large intestine
23 chr5:16492200-16494000 Enhancers Fetal Intestine Small intestine
24 chr5:16492200-16494000 Enhancers Pancreatic Islets Pancreatic Islet
25 chr5:16492200-16494000 Enhancers NHDF-Ad bronchial
26 chr5:16492200-16494200 Enhancers Brain Substantia Nigra brain
27 chr5:16492200-16494400 Weak transcription Left Ventricle heart
28 chr5:16492200-16499600 Weak transcription Right Ventricle heart
29 chr5:16492400-16494000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr5:16492600-16493800 Enhancers Small Intestine intestine
31 chr5:16492600-16494000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:16492600-16494000 Enhancers Adipose Nuclei Adipose
33 chr5:16492600-16494200 Enhancers Hela-S3 cervix
34 chr5:16492600-16494400 Enhancers Placenta Amnion Placenta Amnion
35 chr5:16492800-16493400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr5:16492800-16493400 Flanking Active TSS HMEC breast
37 chr5:16492800-16493600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
38 chr5:16492800-16493600 Enhancers Rectal Mucosa Donor 29 rectum
39 chr5:16492800-16494000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr5:16492800-16494000 Enhancers Brain Anterior Caudate brain
41 chr5:16493000-16493400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr5:16493000-16493400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:16493000-16493400 Enhancers Duodenum Smooth Muscle Duodenum
44 chr5:16493000-16493400 Enhancers Placenta Placenta
45 chr5:16493000-16493400 Flanking Active TSS NHEK skin
46 chr5:16493000-16493600 Enhancers Primary T helper cells PMA-I stimulated --
47 chr5:16493000-16493800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
48 chr5:16493000-16494000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr5:16493000-16494000 Enhancers Liver Liver
50 chr5:16493000-16494000 Flanking Active TSS Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015