The 2.0 version of rSNPBase

Variant report

Variant rs4702148
Chromosome Location chr5:16503190-16503191
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16495800-16504400 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr5:16495800-16509000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:16496200-16509000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr5:16497000-16505800 Weak transcription Duodenum Mucosa Duodenum
5 chr5:16497000-16506200 Weak transcription Thymus Thymus
6 chr5:16497200-16504600 Weak transcription Fetal Intestine Small intestine
7 chr5:16497200-16506800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr5:16498000-16504600 Weak transcription Fetal Intestine Large intestine
9 chr5:16498800-16505400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr5:16500600-16504000 Weak transcription Pancreas Pancrea
11 chr5:16500600-16507400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:16500800-16505200 Weak transcription Fetal Muscle Leg muscle
13 chr5:16501000-16504600 Weak transcription Right Ventricle heart
14 chr5:16501200-16509000 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr5:16501400-16504000 Weak transcription Primary T cells from cord blood blood
16 chr5:16501800-16503200 Enhancers Psoas Muscle Psoas
17 chr5:16502200-16503400 Enhancers Fetal Brain Male brain
18 chr5:16502200-16503600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
19 chr5:16502400-16503200 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr5:16502400-16503200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
21 chr5:16502400-16503200 Enhancers Right Atrium heart
22 chr5:16502400-16508800 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr5:16502600-16503400 Enhancers Fetal Heart heart
24 chr5:16502800-16503200 Enhancers Cortex derived primary cultured neurospheres brain
25 chr5:16502800-16503200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr5:16502800-16503200 Enhancers Brain Cingulate Gyrus brain
27 chr5:16502800-16503200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
28 chr5:16502800-16503400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
29 chr5:16502800-16503400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr5:16502800-16503400 Enhancers Brain Substantia Nigra brain
31 chr5:16503000-16503200 Bivalent Enhancer IMR90 fetal lung fibroblasts Cell Line lung
32 chr5:16503000-16503200 Enhancers Gastric stomach
33 chr5:16503000-16503200 Genic enhancers Left Ventricle heart
34 chr5:16503000-16503200 Enhancers Sigmoid Colon Sigmoid Colon
35 chr5:16503000-16503200 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle
36 chr5:16503000-16503200 Enhancers Stomach Mucosa stomach
37 chr5:16503000-16503400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr5:16503000-16503400 Enhancers Brain Inferior Temporal Lobe brain
39 chr5:16503000-16503400 Flanking Active TSS Hela-S3 cervix
40 chr5:16503000-16503400 Enhancers NHEK skin

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Last update: Aug 31, 2015