Variant report

Variant	rs56190790
Chromosome Location	chr6:109608937-109608938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:109608888-109608938	H1-hESC	embryonic stem cell:	embryo
2	chr6:109608888-109608938	NB4	blood:	n/a
3	chr6:109608888-109608938	Caco-2	colon:	n/a
4	chr6:109608888-109608938	HepG2	liver:	n/a
5	chr6:109608888-109608938	HCF	heart:	n/a
6	chr6:109608888-109608938	BE2_C	brain:	n/a
7	chr6:109608888-109608938	NHDF-neo	bronchial:	n/a
8	chr6:109608888-109608938	PrEC	prostate:	n/a
9	chr6:109608888-109608938	AG04449	skin:	fetal
10	chr6:109608888-109608938	AG09319	gingival:	n/a
11	chr6:109608888-109608938	HCT-116	colon:	n/a
12	chr6:109608888-109608938	ovcar-3	ovarian:	n/a
13	chr6:109608888-109608938	SAEC	small airway:	n/a
14	chr6:109608888-109608938	MCF10A-Er-Src	breast:	n/a
15	chr6:109608888-109608938	CMK	blood:	n/a
16	chr6:109608888-109608938	HRPEpiC	eye:	n/a
17	chr6:109608888-109608938	HEEpiC	esophagus:	n/a
18	chr6:109608888-109608938	PFSK-1	brain:	n/a
19	chr6:109608888-109608938	HAEpiC	amniotic membrane:	n/a
20	chr6:109608888-109608938	BJ	skin:	n/a
21	chr6:109608888-109608938	Jurkat	blood:	n/a
22	chr6:109608888-109608938	HUVEC	blood vessel:	n/a
23	chr6:109608888-109608938	HPAEpiC	pulmonary alveolar:	n/a
24	chr6:109608888-109608938	HCM	heart:	n/a
25	chr6:109608888-109608938	A549	lung:	n/a
26	chr6:109608888-109608938	NT2-D1	testis:	n/a
27	chr6:109608888-109608938	AG04450	lung:	fetal
28	chr6:109608888-109608938	GM19239	blood:	n/a
29	chr6:109608888-109608938	AG09309	skin:	n/a
30	chr6:109608888-109608938	HRCEpiC	kidney:	n/a
31	chr6:109608888-109608938	U87	brain:	n/a
32	chr6:109608888-109608938	GM12878	blood:	n/a
33	chr6:109608888-109608938	T-47D	breast:	n/a
34	chr6:109608888-109608938	ECC-1	luminal epithelium:	n/a
35	chr6:109608888-109608938	HIPEpiC	eye:	n/a
36	chr6:109608888-109608938	HCPEpiC	choroid plexus:	n/a
37	chr6:109608888-109608938	AG10803	skin:	n/a
38	chr6:109608888-109608938	SK-N-SH_RA	brain:	n/a
39	chr6:109608888-109608938	SK-N-MC	brain:	n/a
40	chr6:109608888-109608938	HL-60	blood:	n/a
41	chr6:109608888-109608938	HEK293	kidney:	embryo
42	chr6:109608888-109608938	RPTEC	kidney:	n/a
43	chr6:109608888-109608938	ProgFib	skin:	n/a
44	chr6:109608888-109608938	PANC-1	pancreas:	n/a
45	chr6:109608888-109608938	GM12891	blood:	n/a
46	chr6:109608888-109608938	MCF-7	breast:	n/a
47	chr6:109608888-109608938	LNCaP	prostate:	n/a
48	chr6:109608888-109608938	NHBE	bronchial:	n/a
49	chr6:109608888-109608938	GM12892	blood:	n/a
50	chr6:109608888-109608938	K562	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109605714..109609020-chr6:109609558..109612279,3	K562	blood:
2	chr6:109604413..109609020-chr6:109610779..109613527,4	K562	blood:

No data

Variant related genes	Relation type
CCDC162P	CpG island
ENSG00000233908	CpG island
ENSG00000233908	Chromatin interaction
ENSG00000238474	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000219700	Chromatin interaction

rs_ID	r²[population]
rs352851	0.87[EUR][1000 genomes]
rs380386	0.87[EUR][1000 genomes]
rs55905262	1.00[EUR][1000 genomes]
rs56033250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937095	0.87[EUR][1000 genomes]
rs72939005	1.00[EUR][1000 genomes]
rs72939014	1.00[EUR][1000 genomes]
rs72939037	1.00[EUR][1000 genomes]
rs72939064	1.00[EUR][1000 genomes]
rs72939076	1.00[EUR][1000 genomes]
rs72939089	1.00[EUR][1000 genomes]
rs72939094	1.00[EUR][1000 genomes]
rs72939098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940910	1.00[EUR][1000 genomes]
rs72940915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72947000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109606200-109614400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:109607000-109609000	Weak transcription	K562	blood
5	chr6:109608000-109609000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:109608200-109612800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:109608200-109613200	Weak transcription	Brain Substantia Nigra	brain
8	chr6:109608400-109613200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:109608400-109613400	Weak transcription	Fetal Intestine Small	intestine

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