Variant report

Variant	rs72940915
Chromosome Location	chr6:109565599-109565600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs352851	0.87[EUR][1000 genomes]
rs380386	0.87[EUR][1000 genomes]
rs55905262	1.00[EUR][1000 genomes]
rs56033250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56190790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937095	0.87[EUR][1000 genomes]
rs72939005	1.00[EUR][1000 genomes]
rs72939014	1.00[EUR][1000 genomes]
rs72939037	1.00[EUR][1000 genomes]
rs72939064	1.00[EUR][1000 genomes]
rs72939076	1.00[EUR][1000 genomes]
rs72939089	1.00[EUR][1000 genomes]
rs72939094	1.00[EUR][1000 genomes]
rs72939098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940910	1.00[EUR][1000 genomes]
rs72947000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109558200-109572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:109558800-109566400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:109561600-109566200	Enhancers	K562	blood
4	chr6:109562000-109572400	Weak transcription	Placenta	Placenta
5	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
6	chr6:109564200-109572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:109564600-109566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:109564600-109566200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:109564800-109566000	Enhancers	Adipose Nuclei	Adipose
10	chr6:109564800-109566200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:109565000-109566000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:109565400-109566200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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