Variant report

Variant	rs72939005
Chromosome Location	chr6:109508770-109508771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109506738..109509230-chr6:109702548..109705214,2	MCF-7	breast:
2	chr6:109508327..109509699-chr6:109704031..109705079,7	MCF-7	breast:
3	chr6:109504328..109505857-chr6:109507220..109510008,2	K562	blood:
4	chr6:109508763..109509463-chr6:109704093..109704630,2	MCF-7	breast:
5	chr6:109508691..109509678-chr6:109704160..109705571,8	K562	blood:
6	chr6:109505830..109510944-chr6:109700470..109705597,10	K562	blood:
7	chr6:109505598..109510546-chr6:109701236..109705841,8	K562	blood:
8	chr6:109502825..109510460-chr6:109701859..109705678,15	MCF-7	breast:
9	chr6:109507707..109509211-chr6:109516362..109517988,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs352851	0.87[EUR][1000 genomes]
rs380386	0.87[EUR][1000 genomes]
rs55905262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56033250	1.00[EUR][1000 genomes]
rs56190790	1.00[EUR][1000 genomes]
rs72937095	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72939014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939098	1.00[EUR][1000 genomes]
rs72939101	1.00[EUR][1000 genomes]
rs72940910	1.00[EUR][1000 genomes]
rs72940915	1.00[EUR][1000 genomes]
rs72947000	1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109504200-109509200	Weak transcription	Liver	Liver
2	chr6:109504200-109509200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:109504200-109511200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:109504600-109508800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:109504800-109509200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:109504800-109509400	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:109505000-109511400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:109507800-109509400	Enhancers	Stomach Mucosa	stomach
9	chr6:109508200-109509000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:109508200-109509200	Weak transcription	Fetal Heart	heart
11	chr6:109508200-109509200	Weak transcription	K562	blood
12	chr6:109508200-109509400	Enhancers	Hela-S3	cervix
13	chr6:109508200-109510200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:109508600-109509600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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