Variant report

Variant	rs72939089
Chromosome Location	chr6:109546600-109546601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs352851	0.87[EUR][1000 genomes]
rs380386	0.87[EUR][1000 genomes]
rs55905262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56033250	1.00[EUR][1000 genomes]
rs56190790	1.00[EUR][1000 genomes]
rs72937095	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72939005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939098	1.00[EUR][1000 genomes]
rs72939101	1.00[EUR][1000 genomes]
rs72940910	1.00[EUR][1000 genomes]
rs72940915	1.00[EUR][1000 genomes]
rs72947000	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
2	chr6:109542400-109547800	Weak transcription	Stomach Mucosa	stomach
3	chr6:109544200-109546800	Weak transcription	Aorta	Aorta
4	chr6:109544800-109547200	Enhancers	Psoas Muscle	Psoas
5	chr6:109545000-109546600	Enhancers	Primary T cells from cord blood	blood
6	chr6:109545400-109546600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr6:109545600-109546600	Weak transcription	Spleen	Spleen
8	chr6:109545600-109547000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:109546400-109547200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:109546600-109546800	Enhancers	Spleen	Spleen
11	chr6:109546600-109547000	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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