Variant report

Variant	rs56196402
Chromosome Location	chr16:31069843-31069844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31064732..31066440-chr16:31068952..31071249,2	MCF-7	breast:
2	chr16:31008208..31010268-chr16:31069657..31072184,2	MCF-7	breast:
3	chr16:31069430..31072354-chr16:31084196..31086596,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167395	Chromatin interaction
ENSG00000167394	Chromatin interaction
ENSG00000099365	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13331793	1.00[AMR][1000 genomes]
rs13339393	1.00[AMR][1000 genomes]
rs17878259	1.00[AFR][1000 genomes]
rs28428182	1.00[AMR][1000 genomes]
rs28637378	1.00[AMR][1000 genomes]
rs34107331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34259949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34831291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34889904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55886037	0.82[AFR][1000 genomes]
rs59076556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61237574	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015068	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015069	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015071	1.00[AMR][1000 genomes]
rs74015099	1.00[AMR][1000 genomes]
rs74018303	1.00[AMR][1000 genomes]
rs9888851	1.00[AMR][1000 genomes]
rs9922051	1.00[AMR][1000 genomes]
rs9933960	1.00[AMR][1000 genomes]
rs9940181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
6	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
7	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
8	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
10	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
11	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
12	nsv916994	chr16:30971725-31078117	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
13	nsv827614	chr16:31058322-31072059	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv905740	chr16:31066249-31232437	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
15	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31046000-31071000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:31046000-31083200	Weak transcription	Right Atrium	heart
3	chr16:31048200-31071400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:31049600-31075600	Weak transcription	Psoas Muscle	Psoas
5	chr16:31051200-31071000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:31051400-31083000	Weak transcription	Fetal Lung	lung
7	chr16:31052000-31071800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr16:31052000-31083400	Weak transcription	Primary B cells from cord blood	blood
9	chr16:31052400-31074400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr16:31053800-31072000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr16:31054000-31072600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr16:31054000-31083200	Weak transcription	Fetal Kidney	kidney
13	chr16:31054200-31071000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr16:31054200-31076200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr16:31054400-31071800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr16:31054400-31072000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr16:31054600-31071600	Weak transcription	Dnd41	blood
18	chr16:31054600-31071800	Weak transcription	GM12878-XiMat	blood
19	chr16:31054600-31072000	Weak transcription	Esophagus	oesophagus
20	chr16:31054600-31072200	Weak transcription	Colonic Mucosa	Colon
21	chr16:31054800-31071000	Weak transcription	Fetal Thymus	thymus
22	chr16:31054800-31071400	Weak transcription	Brain Hippocampus Middle	brain
23	chr16:31054800-31071600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr16:31054800-31071600	Weak transcription	Gastric	stomach
25	chr16:31054800-31071800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr16:31054800-31071800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr16:31054800-31071800	Weak transcription	Adipose Nuclei	Adipose
28	chr16:31054800-31071800	Weak transcription	Brain Germinal Matrix	brain
29	chr16:31054800-31072000	Weak transcription	Brain Anterior Caudate	brain
30	chr16:31054800-31072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr16:31054800-31072000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr16:31054800-31072200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr16:31054800-31072200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr16:31054800-31072200	Weak transcription	Right Ventricle	heart
35	chr16:31054800-31072400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr16:31054800-31072400	Weak transcription	Aorta	Aorta
37	chr16:31054800-31072600	Weak transcription	Brain Substantia Nigra	brain
38	chr16:31055000-31071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr16:31055000-31071600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr16:31055000-31072000	Weak transcription	Ovary	ovary
41	chr16:31055000-31072000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr16:31055000-31072200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr16:31055000-31072200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr16:31055200-31071800	Weak transcription	Primary T cells from cord blood	blood
45	chr16:31055200-31071800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr16:31055200-31071800	Weak transcription	Spleen	Spleen
47	chr16:31055200-31072000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr16:31055400-31071200	Weak transcription	Brain Angular Gyrus	brain
49	chr16:31056200-31072400	Weak transcription	Left Ventricle	heart
50	chr16:31060200-31071000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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