Variant report

Variant	rs74018303
Chromosome Location	chr16:31253556-31253557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31252663..31255593-chr16:31260299..31264872,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13331793	1.00[AMR][1000 genomes]
rs13339393	1.00[AMR][1000 genomes]
rs28428182	1.00[AMR][1000 genomes]
rs28637378	1.00[AMR][1000 genomes]
rs34107331	1.00[AMR][1000 genomes]
rs34259949	1.00[AMR][1000 genomes]
rs34831291	1.00[AMR][1000 genomes]
rs34889904	1.00[AMR][1000 genomes]
rs41420744	0.91[AFR][1000 genomes]
rs41465245	0.91[AFR][1000 genomes]
rs41468344	0.91[AFR][1000 genomes]
rs56196402	1.00[AMR][1000 genomes]
rs58372645	0.91[AFR][1000 genomes]
rs59076556	1.00[AMR][1000 genomes]
rs59932244	0.91[AFR][1000 genomes]
rs61237574	1.00[AMR][1000 genomes]
rs74015066	1.00[AMR][1000 genomes]
rs74015068	1.00[AMR][1000 genomes]
rs74015069	1.00[AMR][1000 genomes]
rs74015071	1.00[AMR][1000 genomes]
rs74015099	1.00[AMR][1000 genomes]
rs9888851	1.00[AMR][1000 genomes]
rs9922051	1.00[AMR][1000 genomes]
rs9933960	1.00[AMR][1000 genomes]
rs9940181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
4	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31250400-31262600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:31252600-31258000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr16:31252800-31253800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr16:31252800-31255200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr16:31253200-31254400	Enhancers	Spleen	Spleen
6	chr16:31253400-31253600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr16:31253400-31253600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr16:31253400-31253600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr16:31253400-31253600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr16:31253400-31253800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr16:31253400-31253800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr16:31253400-31253800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr16:31253400-31254000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr16:31253400-31254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:31253400-31254200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr16:31253400-31254400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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