Variant report

Variant	rs9922051
Chromosome Location	chr16:31238164-31238165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31228568..31232083-chr16:31234604..31238425,4	K562	blood:
2	chr16:31231047..31233760-chr16:31237525..31239279,2	MCF-7	breast:
3	chr16:31225061..31229339-chr16:31234222..31239323,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM72-1	chr16:31237281-31238481	ENSG00000261925.1

Variant related genes	Relation type
ENSG00000177238	Chromatin interaction
ENSG00000169900	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13331793	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339393	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637378	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34107331	1.00[AMR][1000 genomes]
rs34259949	1.00[AMR][1000 genomes]
rs34831291	1.00[AMR][1000 genomes]
rs34889904	1.00[AMR][1000 genomes]
rs56196402	1.00[AMR][1000 genomes]
rs59076556	1.00[AMR][1000 genomes]
rs61237574	1.00[AMR][1000 genomes]
rs74015066	1.00[AMR][1000 genomes]
rs74015068	1.00[AMR][1000 genomes]
rs74015069	1.00[AMR][1000 genomes]
rs74015071	1.00[AMR][1000 genomes]
rs74015099	1.00[AMR][1000 genomes]
rs74018303	1.00[AMR][1000 genomes]
rs9888851	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
4	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
5	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
6	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
7	nsv905742	chr16:31102321-31247924	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	188 gene(s)	inside rSNPs	diseases
8	nsv905745	chr16:31216517-31247924	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31227600-31239600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr16:31228400-31240200	Weak transcription	Right Atrium	heart
3	chr16:31228800-31240200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr16:31230400-31238800	Strong transcription	Fetal Muscle Leg	muscle
5	chr16:31231000-31246800	Weak transcription	Psoas Muscle	Psoas
6	chr16:31235000-31240200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr16:31235600-31240600	Weak transcription	Fetal Intestine Small	intestine
8	chr16:31236800-31238200	Strong transcription	HSMM	muscle
9	chr16:31237000-31239600	Weak transcription	K562	blood
10	chr16:31237200-31238200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr16:31237400-31238600	Strong transcription	HSMMtube	muscle
12	chr16:31237600-31239600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr16:31237600-31240600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:31237600-31241800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr16:31238000-31238200	Enhancers	Spleen	Spleen
16	chr16:31238000-31239600	Weak transcription	Ovary	ovary
17	chr16:31238000-31241000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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