Variant report

Variant	rs74015066
Chromosome Location	chr16:31099882-31099883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31099505..31101378-chr16:31121565..31123348,2	K562	blood:
2	chr16:31098290..31102055-chr16:31103024..31106957,5	MCF-7	breast:
3	chr16:31098846..31102191-chr16:31190465..31193332,3	K562	blood:
4	chr16:31098939..31101568-chr16:31190288..31192839,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167397	Chromatin interaction
ENSG00000103507	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000255439	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13331793	1.00[AMR][1000 genomes]
rs13339393	1.00[AMR][1000 genomes]
rs17878259	0.91[AFR][1000 genomes]
rs28428182	1.00[AMR][1000 genomes]
rs28637378	1.00[AMR][1000 genomes]
rs34107331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34259949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34831291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34889904	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56196402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59076556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61237574	1.00[AMR][1000 genomes]
rs74015068	1.00[AMR][1000 genomes]
rs74015069	1.00[AMR][1000 genomes]
rs74015071	1.00[AMR][1000 genomes]
rs74015099	1.00[AMR][1000 genomes]
rs74018303	1.00[AMR][1000 genomes]
rs9888851	1.00[AMR][1000 genomes]
rs9922051	1.00[AMR][1000 genomes]
rs9933960	1.00[AMR][1000 genomes]
rs9940181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
4	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
5	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
6	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
7	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
8	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
10	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
11	nsv905740	chr16:31066249-31232437	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
12	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
13	esv993244	chr16:31091981-31101565	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31086400-31104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:31086600-31104200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr16:31086600-31105200	Weak transcription	Right Atrium	heart
4	chr16:31087200-31102000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:31087200-31103800	Strong transcription	NHLF	lung
6	chr16:31087200-31104200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:31087400-31101800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:31087400-31102800	Strong transcription	Thymus	Thymus
9	chr16:31087400-31103000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:31087400-31104400	Strong transcription	Primary T cells from cord blood	blood
11	chr16:31087400-31104400	Strong transcription	Fetal Intestine Small	intestine
12	chr16:31087600-31100200	Weak transcription	Hela-S3	cervix
13	chr16:31087600-31103000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr16:31087600-31103000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:31087800-31101800	Strong transcription	Liver	Liver
16	chr16:31087800-31101800	Strong transcription	Placenta Amnion	Placenta Amnion
17	chr16:31087800-31102200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:31087800-31102800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:31087800-31103000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr16:31087800-31104000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:31090000-31105200	Weak transcription	Fetal Kidney	kidney
22	chr16:31090400-31104200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr16:31090800-31101200	Weak transcription	HMEC	breast
24	chr16:31090800-31101800	Weak transcription	A549	lung
25	chr16:31090800-31102000	Weak transcription	HUVEC	blood vessel
26	chr16:31090800-31102200	Weak transcription	Primary B cells from cord blood	blood
27	chr16:31091000-31104000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr16:31091400-31102800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr16:31091800-31100800	Strong transcription	Fetal Intestine Large	intestine
30	chr16:31092000-31104600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr16:31092600-31101800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr16:31092600-31101800	Weak transcription	NHDF-Ad	bronchial
33	chr16:31092800-31100400	Weak transcription	Aorta	Aorta
34	chr16:31092800-31101800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr16:31093000-31101800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr16:31093000-31104600	Weak transcription	Small Intestine	intestine
37	chr16:31093400-31101800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr16:31093400-31103800	Weak transcription	Fetal Brain Male	brain
39	chr16:31093600-31102800	Strong transcription	Lung	lung
40	chr16:31093600-31104400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr16:31093600-31104400	Strong transcription	Fetal Stomach	stomach
42	chr16:31093600-31104800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr16:31093800-31101400	Weak transcription	Fetal Lung	lung
44	chr16:31093800-31102000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr16:31093800-31103000	Strong transcription	Brain Cingulate Gyrus	brain
46	chr16:31093800-31104200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr16:31093800-31104200	Weak transcription	Psoas Muscle	Psoas
48	chr16:31093800-31104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr16:31094000-31100800	Strong transcription	Brain Angular Gyrus	brain
50	chr16:31094000-31101600	Weak transcription	Left Ventricle	heart

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