Variant report

Variant	rs56203206
Chromosome Location	chr13:88856697-88856698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16963883	1.00[AMR][1000 genomes]
rs16964065	1.00[AMR][1000 genomes]
rs56248013	1.00[AMR][1000 genomes]
rs58185871	1.00[AMR][1000 genomes]
rs74104217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104429	1.00[AMR][1000 genomes]
rs74104436	1.00[AMR][1000 genomes]
rs74104437	1.00[AMR][1000 genomes]
rs74104452	1.00[AMR][1000 genomes]
rs74104459	1.00[AMR][1000 genomes]
rs74104460	1.00[AMR][1000 genomes]
rs74104465	1.00[AMR][1000 genomes]
rs74104467	1.00[AMR][1000 genomes]
rs74106616	1.00[AMR][1000 genomes]
rs74106637	1.00[AMR][1000 genomes]
rs74106639	1.00[AMR][1000 genomes]
rs74106642	1.00[AMR][1000 genomes]
rs74106811	1.00[AMR][1000 genomes]
rs74106812	1.00[AMR][1000 genomes]
rs74107609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900793	chr13:88711960-88871759	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037729	chr13:88728499-89127873	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv541864	chr13:88728499-89127873	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1806101	chr13:88771495-88910106	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1812668	chr13:88771495-88910106	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88855800-88856800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:88856200-88861000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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