Variant report

Variant	rs16964065
Chromosome Location	chr13:88684622-88684623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs16963883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56203206	1.00[AMR][1000 genomes]
rs56248013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58185871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59150082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59917522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7317093	1.00[AMR][1000 genomes]
rs74103986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104217	1.00[AMR][1000 genomes]
rs74104429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104452	1.00[AMR][1000 genomes]
rs74104459	1.00[AMR][1000 genomes]
rs74104460	1.00[AMR][1000 genomes]
rs74104465	1.00[AMR][1000 genomes]
rs74104467	1.00[AMR][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74106812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107609	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900788	chr13:88554160-88690980	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900789	chr13:88554160-88699143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88683400-88684800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:88684000-88685000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:88684200-88685000	Enhancers	NHEK	skin
4	chr13:88684400-88685000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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