Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs16963883	1.00[AMR][1000 genomes]
rs16964065	1.00[AMR][1000 genomes]
rs56203206	1.00[AMR][1000 genomes]
rs56248013	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58185871	1.00[AMR][1000 genomes]
rs59150082	1.00[AMR][1000 genomes]
rs59917522	1.00[AMR][1000 genomes]
rs74103986	1.00[AMR][1000 genomes]
rs74103987	1.00[AMR][1000 genomes]
rs74104001	1.00[AMR][1000 genomes]
rs74104217	1.00[AMR][1000 genomes]
rs74104231	1.00[AMR][1000 genomes]
rs74104239	1.00[AMR][1000 genomes]
rs74104240	1.00[AMR][1000 genomes]
rs74104429	1.00[AMR][1000 genomes]
rs74104436	1.00[AMR][1000 genomes]
rs74104437	1.00[AMR][1000 genomes]
rs74104452	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs74104460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	1.00[AMR][1000 genomes]
rs74106812	1.00[AMR][1000 genomes]
rs74107609	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900793	chr13:88711960-88871759	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1037729	chr13:88728499-89127873	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv541864	chr13:88728499-89127873	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88764600-88765000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr13:88764600-88765400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:88764600-88765600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:88764800-88765400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:88764800-88765400	Enhancers	Primary hematopoietic stem cells	blood

Quick Search: