Variant report
| Variant | rs58185871 |
|---|---|
| Chromosome Location | chr13:88667822-88667823 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16962286 | 1.00[AMR][1000 genomes] |
| rs16963883 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16964065 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56203206 | 1.00[AMR][1000 genomes] |
| rs56248013 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58386677 | 1.00[AMR][1000 genomes] |
| rs59150082 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59917522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7317093 | 1.00[AMR][1000 genomes] |
| rs73565306 | 1.00[AMR][1000 genomes] |
| rs73565308 | 1.00[AMR][1000 genomes] |
| rs73565313 | 1.00[AMR][1000 genomes] |
| rs73565336 | 1.00[AMR][1000 genomes] |
| rs74103986 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74103987 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74104001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs74104217 | 1.00[AMR][1000 genomes] |
| rs74104429 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74104436 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74104437 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74104452 | 1.00[AMR][1000 genomes] |
| rs74104459 | 1.00[AMR][1000 genomes] |
| rs74104460 | 1.00[AMR][1000 genomes] |
| rs74104465 | 1.00[AMR][1000 genomes] |
| rs74104467 | 1.00[AMR][1000 genomes] |
| rs74106810 | 1.00[AMR][1000 genomes] |
| rs74106811 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74106812 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74107609 | 1.00[AMR][1000 genomes] |
| rs7985798 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900787 | chr13:88554160-88680762 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900788 | chr13:88554160-88690980 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900789 | chr13:88554160-88699143 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900790 | chr13:88585928-88891870 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv900791 | chr13:88623302-88771495 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv900792 | chr13:88623302-88871759 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3447768 | chr13:88637000-88673742 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:88653400-88670400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
