Variant report

Variant	rs7985798
Chromosome Location	chr13:88474330-88474331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs16963883	1.00[AMR][1000 genomes]
rs2184536	1.00[AMR][1000 genomes]
rs58185871	1.00[AMR][1000 genomes]
rs58386677	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59150082	1.00[AMR][1000 genomes]
rs59917522	1.00[AMR][1000 genomes]
rs60620898	1.00[AMR][1000 genomes]
rs6491604	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7317093	1.00[AMR][1000 genomes]
rs73565306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565308	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580563	1.00[AMR][1000 genomes]
rs74103986	1.00[AMR][1000 genomes]
rs74103987	1.00[AMR][1000 genomes]
rs74104001	1.00[AMR][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	1.00[AMR][1000 genomes]
rs74106812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88474000-88474400	Enhancers	Ovary	ovary
2	chr13:88474000-88474800	Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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