Variant report

Variant	rs2184536
Chromosome Location	chr13:88462725-88462726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs58386677	1.00[AMR][1000 genomes]
rs59150082	1.00[AMR][1000 genomes]
rs59917522	1.00[AMR][1000 genomes]
rs60620898	1.00[AMR][1000 genomes]
rs6491604	1.00[AMR][1000 genomes]
rs7317093	1.00[AMR][1000 genomes]
rs73565306	1.00[AMR][1000 genomes]
rs73565308	1.00[AMR][1000 genomes]
rs73565313	1.00[AMR][1000 genomes]
rs73565336	1.00[AMR][1000 genomes]
rs73580563	1.00[AMR][1000 genomes]
rs74103986	1.00[AMR][1000 genomes]
rs74103987	1.00[AMR][1000 genomes]
rs74104001	1.00[AMR][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	1.00[AMR][1000 genomes]
rs74106812	1.00[AMR][1000 genomes]
rs7985798	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562631	chr13:88379124-88470185	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv523153	chr13:88454079-88471137	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88460800-88463800	Active TSS	Hela-S3	cervix
2	chr13:88461000-88463800	Active TSS	A549	lung
3	chr13:88462600-88462800	Active TSS	H1 Cell Line	embryonic stem cell
4	chr13:88462600-88462800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:88462600-88462800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:88462600-88463000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:88462600-88463000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr13:88462600-88463000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:88462600-88463000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr13:88462600-88463000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr13:88462600-88463000	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr13:88462600-88463000	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr13:88462600-88463000	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr13:88462600-88463000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:88462600-88463200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr13:88462600-88463400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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