Variant report

Variant	rs60620898
Chromosome Location	chr13:88450853-88450854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs2184536	1.00[AMR][1000 genomes]
rs58386677	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59150082	1.00[AMR][1000 genomes]
rs59917522	1.00[AMR][1000 genomes]
rs6491604	1.00[AMR][1000 genomes]
rs7317093	1.00[AMR][1000 genomes]
rs73565306	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565313	1.00[AMR][1000 genomes]
rs73565336	1.00[AMR][1000 genomes]
rs73580563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103986	1.00[AMR][1000 genomes]
rs74103987	1.00[AMR][1000 genomes]
rs74104001	1.00[AMR][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	1.00[AMR][1000 genomes]
rs7985798	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562631	chr13:88379124-88470185	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88450800-88451000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:88450800-88451600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:88450800-88451800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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