Variant report

Variant	rs73565313
Chromosome Location	chr13:88472998-88472999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs2184536	1.00[AMR][1000 genomes]
rs58185871	1.00[AMR][1000 genomes]
rs58386677	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59150082	1.00[AMR][1000 genomes]
rs59917522	1.00[AMR][1000 genomes]
rs60620898	1.00[AMR][1000 genomes]
rs6491604	1.00[AMR][1000 genomes]
rs7317093	1.00[AMR][1000 genomes]
rs73565306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580563	1.00[AMR][1000 genomes]
rs74103986	1.00[AMR][1000 genomes]
rs74103987	1.00[AMR][1000 genomes]
rs74104001	1.00[AMR][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	1.00[AMR][1000 genomes]
rs74106812	1.00[AMR][1000 genomes]
rs7985798	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88466400-88474000	Weak transcription	Hela-S3	cervix
2	chr13:88471200-88473200	Enhancers	Fetal Lung	lung
3	chr13:88472400-88473000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:88472600-88473000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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