Variant report
| Variant | rs6491604 |
|---|---|
| Chromosome Location | chr13:88412736-88412737 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:88412062..88412964-chr3:57678296..57678876,2 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000174839 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs16962286 | 1.00[AMR][1000 genomes] |
| rs2184536 | 1.00[AMR][1000 genomes] |
| rs58386677 | 1.00[AMR][1000 genomes] |
| rs60620898 | 1.00[AMR][1000 genomes] |
| rs7317093 | 1.00[AMR][1000 genomes] |
| rs73565306 | 1.00[AMR][1000 genomes] |
| rs73565308 | 1.00[AMR][1000 genomes] |
| rs73565313 | 1.00[AMR][1000 genomes] |
| rs73565336 | 1.00[AMR][1000 genomes] |
| rs73580563 | 1.00[AMR][1000 genomes] |
| rs74103986 | 1.00[AMR][1000 genomes] |
| rs74103987 | 1.00[AMR][1000 genomes] |
| rs7985798 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv562631 | chr13:88379124-88470185 | Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
