Variant report

Variant	rs74103987
Chromosome Location	chr13:88619697-88619698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16962286	1.00[AMR][1000 genomes]
rs16963883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964065	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2184536	1.00[AMR][1000 genomes]
rs56248013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58185871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58386677	1.00[AMR][1000 genomes]
rs59150082	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59917522	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60620898	1.00[AMR][1000 genomes]
rs6491604	1.00[AMR][1000 genomes]
rs7317093	1.00[AMR][1000 genomes]
rs73565306	1.00[AMR][1000 genomes]
rs73565308	1.00[AMR][1000 genomes]
rs73565313	1.00[AMR][1000 genomes]
rs73565336	1.00[AMR][1000 genomes]
rs73580563	1.00[AMR][1000 genomes]
rs74103986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104001	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104436	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104437	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104452	1.00[AMR][1000 genomes]
rs74104459	1.00[AMR][1000 genomes]
rs74104460	1.00[AMR][1000 genomes]
rs74104465	1.00[AMR][1000 genomes]
rs74104467	1.00[AMR][1000 genomes]
rs74106810	1.00[AMR][1000 genomes]
rs74106811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74106812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7985798	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562632	chr13:88532287-88622740	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv900787	chr13:88554160-88680762	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900788	chr13:88554160-88690980	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900789	chr13:88554160-88699143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv983534	chr13:88617783-88623130	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88619600-88622200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links