Variant report

Variant	rs56234785
Chromosome Location	chr10:43832384-43832385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:43831899-43832816	A549	lung:	n/a	chr10:43832495-43832504 chr10:43832494-43832505
2	MAX	chr10:43832236-43832736	A549	lung:	n/a	chr10:43832495-43832504 chr10:43832494-43832505
3	FOSL2	chr10:43832186-43832832	A549	lung:	n/a	chr10:43832591-43832605
4	USF1	chr10:43832363-43832711	A549	lung:	n/a	n/a
5	USF1	chr10:43832322-43832702	A549	lung:	n/a	n/a
6	SP1	chr10:43832168-43833025	A549	lung:	n/a	n/a
7	USF1	chr10:43832321-43832652	A549	lung:	n/a	n/a
8	YY1	chr10:43832115-43832702	A549	lung:	n/a	n/a
9	USF1	chr10:43832346-43832735	A549	lung:	n/a	n/a
10	TCF12	chr10:43832162-43832861	A549	lung:	n/a	chr10:43832255-43832265
11	USF1	chr10:43832301-43832793	A549	lung:	n/a	n/a
12	FOXA2	chr10:43832356-43833041	A549	lung:	n/a	n/a
13	NR3C1	chr10:43832202-43832843	A549	lung:	n/a	n/a
14	USF1	chr10:43832333-43832728	A549	lung:	n/a	n/a
15	MAX	chr10:43831798-43832830	A549	lung:	n/a	chr10:43832495-43832504 chr10:43832494-43832505
16	SP1	chr10:43832117-43832898	A549	lung:	n/a	n/a
17	E2F6	chr10:43831978-43832826	A549	lung:	n/a	n/a
18	JUND	chr10:43832203-43832738	A549	lung:	n/a	chr10:43832591-43832605

Variant related genes	Relation type
RNU6ATAC11P	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1106215	1.00[ASN][1000 genomes]
rs11238575	1.00[ASN][1000 genomes]
rs17153601	1.00[ASN][1000 genomes]
rs17366781	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856400	1.00[ASN][1000 genomes]
rs1879311	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248807	1.00[ASN][1000 genomes]
rs2253260	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264603	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265955	1.00[ASN][1000 genomes]
rs2819025	1.00[ASN][1000 genomes]
rs2999222	1.00[ASN][1000 genomes]
rs3006393	1.00[ASN][1000 genomes]
rs3006410	1.00[ASN][1000 genomes]
rs3124211	1.00[ASN][1000 genomes]
rs4948727	1.00[ASN][1000 genomes]
rs55765722	1.00[ASN][1000 genomes]
rs56037308	1.00[ASN][1000 genomes]
rs56087058	1.00[ASN][1000 genomes]
rs56237566	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56252639	1.00[ASN][1000 genomes]
rs56275379	1.00[ASN][1000 genomes]
rs7072967	1.00[ASN][1000 genomes]
rs7073345	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084621	1.00[ASN][1000 genomes]
rs7085670	1.00[ASN][1000 genomes]
rs72785234	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785236	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785237	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785243	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785246	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785248	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785255	1.00[ASN][1000 genomes]
rs72785256	1.00[ASN][1000 genomes]
rs72785266	1.00[ASN][1000 genomes]
rs72787434	1.00[ASN][1000 genomes]
rs7916718	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43828800-43833200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:43828800-43839600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:43828800-43839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:43829000-43834200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:43829600-43833600	Weak transcription	Lung	lung
6	chr10:43831000-43833400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:43831600-43832600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:43831800-43832600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:43832000-43832400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:43832000-43832400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr10:43832000-43832600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:43832000-43832600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:43832000-43832600	Enhancers	Fetal Intestine Large	intestine
14	chr10:43832000-43832600	Enhancers	Fetal Muscle Leg	muscle
15	chr10:43832000-43832800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:43832000-43832800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:43832000-43832800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:43832000-43832800	Enhancers	Fetal Intestine Small	intestine
19	chr10:43832000-43833000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:43832000-43833000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:43832200-43832400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:43832200-43832400	Enhancers	HepG2	liver
23	chr10:43832200-43832600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr10:43832200-43832600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:43832200-43832600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:43832200-43832600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:43832200-43832600	Enhancers	Pancreas	Pancrea
28	chr10:43832200-43832600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr10:43832200-43832600	Flanking Active TSS	A549	lung
30	chr10:43832200-43832800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
31	chr10:43832200-43832800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:43832200-43832800	Enhancers	Duodenum Mucosa	Duodenum
33	chr10:43832200-43832800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr10:43832200-43832800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr10:43832200-43832800	Enhancers	NHEK	skin
36	chr10:43832200-43833000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:43832200-43833000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr10:43832200-43833000	Enhancers	Placenta	Placenta
39	chr10:43832200-43834000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr10:43832200-43834000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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