Variant report

Variant	rs55765722
Chromosome Location	chr10:43888938-43888939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43832614..43835578-chr10:43888340..43890232,2	MCF-7	breast:
2	chr10:43887055..43906178-chr10:43946385..43955803,85	K562	blood:
3	chr10:43873117..43874743-chr10:43887091..43889680,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252532	Chromatin interaction
ENSG00000243660	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1106215	1.00[ASN][1000 genomes]
rs11238575	1.00[ASN][1000 genomes]
rs17153601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17366781	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856400	1.00[ASN][1000 genomes]
rs1879311	1.00[ASN][1000 genomes]
rs2248707	0.87[AFR][1000 genomes]
rs2248807	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253260	1.00[ASN][1000 genomes]
rs2261637	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2264603	1.00[ASN][1000 genomes]
rs2265955	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2812798	0.92[EUR][1000 genomes]
rs2819025	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2999222	1.00[ASN][1000 genomes]
rs2999288	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2999290	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3006393	1.00[ASN][1000 genomes]
rs3006410	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3124211	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948727	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037308	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56087058	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234785	1.00[ASN][1000 genomes]
rs56237566	1.00[ASN][1000 genomes]
rs56252639	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275379	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072967	1.00[ASN][1000 genomes]
rs7073345	1.00[ASN][1000 genomes]
rs7084621	1.00[ASN][1000 genomes]
rs7085670	1.00[ASN][1000 genomes]
rs72785234	1.00[ASN][1000 genomes]
rs72785236	1.00[ASN][1000 genomes]
rs72785237	1.00[ASN][1000 genomes]
rs72785243	1.00[ASN][1000 genomes]
rs72785246	1.00[ASN][1000 genomes]
rs72785248	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785255	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787434	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916718	1.00[ASN][1000 genomes]
rs9422365	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
6	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43873200-43890200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:43873400-43891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:43879200-43889800	Strong transcription	Brain Germinal Matrix	brain
5	chr10:43879400-43889400	Strong transcription	Fetal Brain Female	brain
6	chr10:43879600-43889400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:43879800-43889400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr10:43879800-43890600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:43880000-43889400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:43880000-43889600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:43880000-43889600	Strong transcription	Thymus	Thymus
12	chr10:43880000-43890200	Strong transcription	Fetal Muscle Leg	muscle
13	chr10:43880000-43890200	Strong transcription	HSMMtube	muscle
14	chr10:43880000-43890400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr10:43880000-43890800	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr10:43880200-43889000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:43880200-43890000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:43880200-43890200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:43880200-43890200	Strong transcription	Osteobl	bone
20	chr10:43880200-43890800	Strong transcription	HSMM	muscle
21	chr10:43880400-43889000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:43880400-43889000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:43880400-43889600	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:43880400-43890200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:43880400-43890400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:43880400-43890400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:43880400-43890800	Strong transcription	Hela-S3	cervix
28	chr10:43880600-43889600	Strong transcription	Esophagus	oesophagus
29	chr10:43880600-43890600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:43880600-43890600	Strong transcription	NH-A	brain
31	chr10:43880800-43889400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:43880800-43889800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:43880800-43890200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:43881000-43889400	Strong transcription	HUVEC	blood vessel
35	chr10:43881000-43889600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:43881000-43890000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:43881000-43890400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr10:43881200-43889600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:43881200-43890000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:43881200-43890800	Strong transcription	Lung	lung
41	chr10:43881600-43889000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr10:43881600-43890000	Strong transcription	NHDF-Ad	bronchial
43	chr10:43881800-43889400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:43881800-43890000	Strong transcription	NHLF	lung
45	chr10:43882000-43889200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr10:43882000-43889600	Strong transcription	Colonic Mucosa	Colon
47	chr10:43882000-43889800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:43882000-43889800	Strong transcription	Aorta	Aorta
49	chr10:43882000-43889800	Strong transcription	Small Intestine	intestine
50	chr10:43882000-43890000	Strong transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links