Variant report
| Variant | rs7072967 |
|---|---|
| Chromosome Location | chr10:44015827-44015828 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:44015456..44018280-chr10:44141593..44143815,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236114 | TF binding region |
| ENSG00000169740 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1106215 | 1.00[ASN][1000 genomes] |
| rs11238575 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17153601 | 1.00[ASN][1000 genomes] |
| rs17366781 | 1.00[ASN][1000 genomes] |
| rs1856400 | 1.00[ASN][1000 genomes] |
| rs1879311 | 1.00[ASN][1000 genomes] |
| rs2248807 | 1.00[ASN][1000 genomes] |
| rs2253260 | 1.00[ASN][1000 genomes] |
| rs2264603 | 1.00[ASN][1000 genomes] |
| rs2265955 | 1.00[ASN][1000 genomes] |
| rs2819025 | 1.00[ASN][1000 genomes] |
| rs2999222 | 1.00[ASN][1000 genomes] |
| rs3006393 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3006410 | 1.00[ASN][1000 genomes] |
| rs3124211 | 1.00[ASN][1000 genomes] |
| rs4948727 | 1.00[ASN][1000 genomes] |
| rs55765722 | 1.00[ASN][1000 genomes] |
| rs56037308 | 1.00[ASN][1000 genomes] |
| rs56087058 | 1.00[ASN][1000 genomes] |
| rs56234785 | 1.00[ASN][1000 genomes] |
| rs56237566 | 1.00[ASN][1000 genomes] |
| rs56252639 | 1.00[ASN][1000 genomes] |
| rs56275379 | 1.00[ASN][1000 genomes] |
| rs7073345 | 1.00[ASN][1000 genomes] |
| rs7084621 | 1.00[ASN][1000 genomes] |
| rs7084943 | 0.83[EUR][1000 genomes] |
| rs7085670 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72785234 | 1.00[ASN][1000 genomes] |
| rs72785236 | 1.00[ASN][1000 genomes] |
| rs72785237 | 1.00[ASN][1000 genomes] |
| rs72785243 | 1.00[ASN][1000 genomes] |
| rs72785246 | 1.00[ASN][1000 genomes] |
| rs72785248 | 1.00[ASN][1000 genomes] |
| rs72785255 | 1.00[ASN][1000 genomes] |
| rs72785256 | 1.00[ASN][1000 genomes] |
| rs72785266 | 1.00[ASN][1000 genomes] |
| rs72787434 | 1.00[ASN][1000 genomes] |
| rs7916718 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051325 | chr10:43988273-44022473 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv275081 | chr10:43996713-44018932 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7072967 | ZNF239 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44012800-44021800 | ZNF genes & repeats | Liver | Liver |
| 2 | chr10:44013000-44022600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
