Variant report

Variant	rs2264603
Chromosome Location	chr10:43831280-43831281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1106215	1.00[ASN][1000 genomes]
rs11238575	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17153601	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17366781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856400	1.00[ASN][1000 genomes]
rs1879311	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248807	1.00[ASN][1000 genomes]
rs2253260	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2261637	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs2265955	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2393949	1.00[CHB][hapmap]
rs2819025	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2999222	1.00[ASN][1000 genomes]
rs2999237	1.00[CHB][hapmap]
rs2999238	1.00[CHB][hapmap]
rs2999290	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs3006389	1.00[CHB][hapmap]
rs3006393	1.00[ASN][1000 genomes]
rs3006410	1.00[ASN][1000 genomes]
rs3124211	1.00[ASN][1000 genomes]
rs4948727	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55765722	1.00[ASN][1000 genomes]
rs56037308	1.00[ASN][1000 genomes]
rs56087058	1.00[ASN][1000 genomes]
rs56234785	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56237566	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56252639	1.00[ASN][1000 genomes]
rs56275379	1.00[ASN][1000 genomes]
rs7068859	1.00[CHB][hapmap]
rs7072967	1.00[ASN][1000 genomes]
rs7073345	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084621	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7085670	1.00[ASN][1000 genomes]
rs72785234	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785236	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785237	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785243	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785246	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785248	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785255	1.00[ASN][1000 genomes]
rs72785256	1.00[ASN][1000 genomes]
rs72785266	1.00[ASN][1000 genomes]
rs72787434	1.00[ASN][1000 genomes]
rs7916718	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43825600-43832000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:43825600-43832200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:43825600-43832200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:43826400-43831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:43826400-43832200	Weak transcription	HepG2	liver
6	chr10:43828800-43832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:43828800-43832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:43828800-43832000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:43828800-43832200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:43828800-43833200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:43828800-43839600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:43828800-43839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:43829000-43834200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:43829400-43831400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:43829400-43832200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:43829600-43833600	Weak transcription	Lung	lung
17	chr10:43830800-43831800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:43831000-43831800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:43831000-43833400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:43831200-43831400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:43831200-43832200	Enhancers	A549	lung

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